Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0630 ATGTATGGGTTCTTGCCTTGTTCAAGCAATATGCTTGGTCATCTGTTTCTGATTTTGGGTTATGAGTACTTGTTCTATGGAGAATCGTATTTGGTTGATGGAGGTGAGCAGATCTTCAAGATTCTTGTTTCTGGACTTGTCAGCAGTAAGGAGATTGCACAAGAGCTATTTAGAGAAGTGGATCAAAATGAAGACAGTGTTGTATCAGCTTCGGAAGTAAAACAGATACTGCTTAGCAAATCAAGTGAAAGAAGTATCAGTGAAGAGGAAATAGAAGGCATTTTAAGAATCTTTAACTTGGATGATGATCAGAATAGAATAACTAAGGATGAATTTGTGAGTGGCTTTATAAAATGGCTTGAACAAACCAAGTTTGCTATCAATAAACCGTATATATCAAGGAAATCACTCAAGGAGTTATATCAGGTTTTTGAGCCATGGATTGAGAACAAAAGGAGAGAACAAGAAACGAAGAAACATATCTTATCTGAGATCTTTAGGCATATTCAGAGCGATTTGGTTGTCAACCTTATCACTGAAGATGGAAAACCTGATGAACTTGCTATAAGAAGGTTATTTGACAAGATGGATACCAATGAAGATAACTGCATTTCCCATTCTGAGTTAAGAAAACTACTCAAGGAAATCAATATTGCAAAAGCATCAATAGATGTGGAGGAAGCAGCTAATAAATTCATTGAAGAACTTGACGTTGACAGGGACCATGTCATTAGTTAG 738 0.3618 MYGFLPCSSNMLGHLFLILGYEYLFYGESYLVDGGEQIFKILVSGLVSSKEIAQELFREVDQNEDSVVSASEVKQILLSKSSERSISEEEIEGILRIFNLDDDQNRITKDEFVSGFIKWLEQTKFAINKPYISRKSLKELYQVFEPWIENKRREQETKKHILSEIFRHIQSDLVVNLITEDGKPDELAIRRLFDKMDTNEDNCISHSELRKLLKEINIAKASIDVEEAANKFIEELDVDRDHVIS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0630 245 Gene3D - 116 245 - -
Lele09g0630 245 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Lele09g0630 245 SUPERFAMILY EF-hand 53 245 IPR011992 -
Lele09g0630 245 SMART efh_1 52 80 IPR002048 GO:0005509
Lele09g0630 245 SMART efh_1 188 216 IPR002048 GO:0005509
Lele09g0630 245 CDD EFh 189 245 IPR002048 GO:0005509
Lele09g0630 245 Pfam EF-hand domain pair 188 245 IPR002048 GO:0005509
Lele09g0630 245 ProSitePatterns EF-hand calcium-binding domain. 197 209 IPR018247 -
Lele09g0630 245 Coils Coil 209 229 - -
Lele09g0630 245 ProSiteProfiles EF-hand calcium-binding domain profile. 184 219 IPR002048 GO:0005509
Lele09g0630 245 ProSiteProfiles EF-hand calcium-binding domain profile. 224 245 IPR002048 GO:0005509
Lele09g0630 245 Gene3D - 40 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0630 Lele-ChrLele09 4813759 4817702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0630 2 241 EF-hand Containing Proteins AT1G53210 26.117 1.07e-21 91.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0630 09 4813759 4817702 Lele09g0630 09 4813759 4817702 ECH
Lele09g0630 09 4813759 4817702 Lele11g0641 11 6209384 6213161 hybridization
Lele09g0630 09 4813759 4817702 Lele12g0693 12 15130852 15141539 hybridization