Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0640 ATGAGCAAAGCCAGGGACGGGGAAGACGAAGAAGAGCGCTTCTACGAGTCTCATGACCGTTTAGTTTCGTCCTCTTGCTCCTGCTCCACTTCTAACTCCGATGACGACGACAACGACAATGGCTCCAGTCCCAACTCCCCCAATTATGGTTCGGGCCAACCCTTCCCCGTACCCAAATTCCCGGCGGCCATGTGCAAGTACGATGTTTGGATCTCCGAACCGTCGTCGGTTTCTGAACGCCGGACCCGTCTGCTTCGTGAGATGGGTCTCGCCGGCGACCCGTCATTGTCCCGGGGGACTTCTGCCGATGATCTTAGAGAAATGGCCAATGAAGAGTTTGGCCGATCGGCTTCTACCGATCACTTGAGTCGTCAACGGCAGGGTGAAACTGAGACGGAAACTTCTGGTTGCACCGCCGGCATATCCCGATCGAAATCAGACGGTGGCGCGGATCTCGGTGACCTGCAACTGTGTACTGGTCCTTCTCGTCCTCGTCAATATAAGTCTACTTCTGCCTTTTGTTCTTCAGTTCTTTCAATTCACTCGGTCGCTTCAGAGAAGGGCTCATTTGTAAATAGCCGTAATCAAGTCGTAAAGTCGAGGCGCGGCAATGGCTATGGATCCCGGATTGCTAATGCTGCCTTACCCAGTAAGCCGCCTTCAGGGAAAAATTGCAAGAAAGTAGATGAAATCCGAAGCGGCTCCTCGAACTTGAGCATGGATTTCGGCCAGTTTTCGGTGGAGCAAGTTTTGGAGAATGCAGGTCGTGGGGGAGTGGAGGAGGGTGCGAACTGTGATGGGCTTGACAGTGCTGATGATCAAGTGTGCACCATAAGAGATCTCGATAATGGCAAAGAATTTGTAGTCAAGGAGATTAGGGAAGACGGAACGTGGAACAAATTGAAGGAAGTGGGAACTGGAAGGCAGTTGACCATGGAGGAGTTTGAGATGACAGTGGGTCACTCACCAATTGTTCAAGAATTGATGAGACGACAAAATTTTGAGGAGGGTGACAAGGTCAATGTAGATTCAAAGGCAACTGCAAATGGCGGTAGTGGAGGTGGTACCAAGGTAAAGAAGAAAGGGGGTTGGTTTAAGAGTGTAAAGAGTGTTGCTAGCACCATGACGGGTTATAAGGACAGACGGAGTAGTGATGAAAGGAATACCTCGTCTGAAAAGGGTGGGCGGAGGTCAAGTTCTGCTGCAGATGAAAGCCAAGATGCCTGTTTACATGGTCCTGAAAGAGTAAGGGTTAGGCAGTATGGAAAGTCATGTAAAGAGGTTACTGCACTCTATAAAAGCCAGGAGATACAGGCTCATAATGGATCTATATGGAGCATTAAGTTTAGTTTGGACGGGAAATATCTTGCTAGTGCAGGTGAGGATCGTGTAATTCATGTGTGGCAAGTTGTGGAGTCAGAGAGGAAGGCGGAGCTGCTAATGGAGAAACCAGGTTATGGGAACATGAATACGTTATTGGTTATGAATGGATACACTGAACCAACCTTACTATCCCCTAGCCATCCAGAGACGAAGACAAAGGGGAGGTCATCCATCAGCAGAAAATCATTGAGCTTGGACCAGTTAGTGGTGCCAGAAACTATGTTTGCACTAACTGAAAAACCTATTTGCACATTCCAAGGTCATGATGATGATGTGCTTGATCTATCTTGGTCCAAATCTCAGCACTTGCTTTCCTCTTCAATGGATAAGACGGTGCGGCTGTGGCATTTATCTAGCAATTCTTGTTTGAAAGTTTTTTCACACAGTGACTATGTAACTTGCATCCAATTTAATCCCGTTGATGATAGATACTTCATTAGCGGATCTTTGGATTATAAGGTTCGCATATGGAGTATTCCTAATCATCAAGTTGTTGATTGGACTGATTTGCATGAGATGGTCACTGCTACTTGCTACACACCTGATGGTCAGGGTGCACTGGTAGGTTCATACAAGGGCAGCTGCCATTTGTACAATGCATCCGGAAATAAATTGCAACAGAAGAGTGAGATTATGCTGCAGAACAAGAAAAAGAAGTCAAATCTCAAGAAAATTACTGGCTTCCAGTTTGCTCCAGGAAGTTCATCAGAATTACTCATAACATCTGCTGATTCTCGAATTCGATTGGTTGATGGTGTTAACCTGGTTCATAAGTTCAAAGGGTTTCGTAACACAAATAGCCAAATTTTAGCCTCGTTCACAGCAAATGGAAAATATATAGTCTCAGCAAGTGAGGATTCCCATGTGTATATGTGGAAAAATGAAGCTAATTGCAGGCCCAACAGAACCAAAGGCGTCACCATCACTCAGTCATATGAACATTTTCATTGTAGAGACGTGTCAGTGGCTATTCCTTGGCCTGGTATGGGTGATGCATGGGAAATGCAAGATACTTTATCCAGAGAACAGACTGGGGCCGATAGTATCCCTGATGAGGTCTCATCGGTGAATCATCCCCCAACCCCGGTAGATGAGGCATTAGGGGCCAACGACGGTTCACTTCATGGAACTATAGCTAGTACTACAAACAGTTATTTTTTTGAGAGAATTTCCGCGACATGGCCGGAGGAAAAACTTGTTCTTGCTGCCAGGAGACGAAGCCCTCGAGTTAGTGTGGATATCTCAGACGGGGTTAATCAAAACATGTCAGCCTGGGGCTTGGTGATGGTAACTGCTGGCCTTCGAGGGGAAATCCGAGCTTTTCAGAATTTTGGATTGCCGCTGCGGATATAA 2736 0.4664 MSKARDGEDEEERFYESHDRLVSSSCSCSTSNSDDDDNDNGSSPNSPNYGSGQPFPVPKFPAAMCKYDVWISEPSSVSERRTRLLREMGLAGDPSLSRGTSADDLREMANEEFGRSASTDHLSRQRQGETETETSGCTAGISRSKSDGGADLGDLQLCTGPSRPRQYKSTSAFCSSVLSIHSVASEKGSFVNSRNQVVKSRRGNGYGSRIANAALPSKPPSGKNCKKVDEIRSGSSNLSMDFGQFSVEQVLENAGRGGVEEGANCDGLDSADDQVCTIRDLDNGKEFVVKEIREDGTWNKLKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNFEEGDKVNVDSKATANGGSGGGTKVKKKGGWFKSVKSVASTMTGYKDRRSSDERNTSSEKGGRRSSSAADESQDACLHGPERVRVRQYGKSCKEVTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDRVIHVWQVVESERKAELLMEKPGYGNMNTLLVMNGYTEPTLLSPSHPETKTKGRSSISRKSLSLDQLVVPETMFALTEKPICTFQGHDDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSNSCLKVFSHSDYVTCIQFNPVDDRYFISGSLDYKVRIWSIPNHQVVDWTDLHEMVTATCYTPDGQGALVGSYKGSCHLYNASGNKLQQKSEIMLQNKKKKSNLKKITGFQFAPGSSSELLITSADSRIRLVDGVNLVHKFKGFRNTNSQILASFTANGKYIVSASEDSHVYMWKNEANCRPNRTKGVTITQSYEHFHCRDVSVAIPWPGMGDAWEMQDTLSREQTGADSIPDEVSSVNHPPTPVDEALGANDGSLHGTIASTTNSYFFERISATWPEEKLVLAARRRSPRVSVDISDGVNQNMSAWGLVMVTAGLRGEIRAFQNFGLPLRI 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0640 911 PANTHER WD REPEAT DOMAIN 44 7 908 IPR040324 -
Lele12g0640 911 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 437 470 - -
Lele12g0640 911 FunFam WD repeat-containing protein 44 527 793 - -
Lele12g0640 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 620 IPR001680 GO:0005515
Lele12g0640 911 MobiDBLite consensus disorder prediction 87 157 - -
Lele12g0640 911 SUPERFAMILY WD40 repeat-like 432 756 IPR036322 GO:0005515
Lele12g0640 911 MobiDBLite consensus disorder prediction 375 411 - -
Lele12g0640 911 MobiDBLite consensus disorder prediction 104 128 - -
Lele12g0640 911 PRINTS G protein beta WD-40 repeat signature 456 470 IPR020472 -
Lele12g0640 911 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Lele12g0640 911 PRINTS G protein beta WD-40 repeat signature 606 620 IPR020472 -
Lele12g0640 911 MobiDBLite consensus disorder prediction 379 400 - -
Lele12g0640 911 Gene3D - 380 495 IPR015943 GO:0005515
Lele12g0640 911 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 620 - -
Lele12g0640 911 SMART WD40_4 539 577 IPR001680 GO:0005515
Lele12g0640 911 SMART WD40_4 622 660 IPR001680 GO:0005515
Lele12g0640 911 SMART WD40_4 580 619 IPR001680 GO:0005515
Lele12g0640 911 SMART WD40_4 676 712 IPR001680 GO:0005515
Lele12g0640 911 SMART WD40_4 713 754 IPR001680 GO:0005515
Lele12g0640 911 SMART WD40_4 430 469 IPR001680 GO:0005515
Lele12g0640 911 MobiDBLite consensus disorder prediction 1 19 - -
Lele12g0640 911 Pfam WD domain, G-beta repeat 582 619 IPR001680 GO:0005515
Lele12g0640 911 Pfam WD domain, G-beta repeat 436 468 IPR001680 GO:0005515
Lele12g0640 911 Pfam WD domain, G-beta repeat 541 576 IPR001680 GO:0005515
Lele12g0640 911 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 580 - -
Lele12g0640 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 437 478 IPR001680 GO:0005515
Lele12g0640 911 Gene3D - 522 776 IPR015943 GO:0005515
Lele12g0640 911 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 586 IPR001680 GO:0005515
Lele12g0640 911 MobiDBLite consensus disorder prediction 20 52 - -
Lele12g0640 911 MobiDBLite consensus disorder prediction 1 58 - -
Lele12g0640 911 MobiDBLite consensus disorder prediction 336 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0640 Lele-ChrLele12 14747637 14753173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0640 544 778 Acyl Lipid Metabolism Gene Families AT3G18860 26.374 5.85e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0640 12 14747637 14753173 Lele12g0640 12 14747637 14753173 ECH
Lele09g0687 09 5220769 5224807 Lele12g0640 12 14747637 14753173 hybridization
Lele10g0626 10 4627338 4632890 Lele12g0640 12 14747637 14753173 hybridization