Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0565 ATGCGCGCCTCCAAAGCTAAAAGCCTTGGCACTCTGGGCACTCTCATACGAAACACTGGCACATTCAAATATTCTCTTCTAAGCAAGACCGTTTCTGAAAATTGCAATTCTAGACTCTACAGTGATTATGTGCTCTCAAGCCTCAAGCTTAAGCAAGCCTCTGACTCAGAGGATTTGCCCGGTATGGTGTCTAAGCGAATACGCTCAATATTGGACTCCGGTCAGTTGGACAATAGACCTGAACCCGGGGATGTTGACAGTGCAAAAGATTTGGAAAAAATATCAGATATATCTCGCTTGATGAAGAACATGTCTCATAGTACAGTATCTCTGAAACGGAAAGAGTTTTCTCGTGAAAAGAAACGAAATTGTAAGTTTGAATCCAGACAATCAAACCGTTTTGGCAAGTTACTCGTATCTTGTGCGGATAAACTAGGAGCAGAGGCTGTGCTTAAGCTGTTCTATAAGTTGGGCCGAGAACTAGGTGTGAAAGATTACAATGTACTGATAGGAATGTGCATAGGTAAGGCTAGAGAAACTGAAGACGAAGAAATTGCAATAGAAGAAATGGCCAAGGTGCTTCACATCTTAAAATCAATGAGGGAAAAAGGTTTTCTGCTTGAGGAGAAAACTTATCGCCCACTTCTTTTGCATATAATAGAGATGGGCATGGTAGAAGAGTTTCAGTTTTTTATTGACTTTATTAAAGACAACAATCCCAGCTCACTTTCTAGATTGGGTTACTATGAAATGATGTTCTGGTTAAGAGTTAATAATGAAGAAAAGATTCGAGATGTTTGTGCCTATATTGCAAACAATGATGGTGCAGACACTTCAGAATTACGAGAAAATTATTTATTGGCTCTCTGTGAAAGTCATCGGAAGAAGGATATTTTGCAGGTGTTGGAAACTGTAGACATCAAAGAGCTCTCGTCTGCAGAATCTAAGGCAAAGATATTTCAATCATTAGGAAGGCTACTATTGGAACCTGTTTCAGAGAAGTTCCTTTTGGATTTCAAAATATGTGGTCATGAAGCAGAAAATATCACAAACTTCATTGCTAGCTATGCTGTTAGCATGCCAAAGTTAGCGATGGAGGATGTCGTCTCAAAATTCAAGGAATTGCACCAGACACTGAAAGTTCCACCTTCATCCTCGTCATATGAGAAGCTTATTTTGCACAGCTGTGCCTCATTGAAGGTGCCTATAGCTCTCGATATTGTTGATGAAATGTGTGAAGGAGGCTTTACCTTATCAACGAAGGTGTTGCACTCCATATTAAAAACTTGTGCGGAAACCCACGAGTATAATTTGGCCCATCGGATCTACGCCATCATTCATCGGTACAATTTAGAGTTAAATGATGAAATATTGAGGTGTCTAATAATTTTGTTCACAAAGATGAAAGATTTTGAAAGCGCATATAAGATGCTTGATGAGTTGGATGAAAGGGGTTTGAAGCCTACTACGGGAATGTATAATGCTATAATGGGAGAACATTTTCGAGAGAAGAACATTCATGATGGGCTGAGAGCACTTGAGCGCATGCAGTGTGCCAATATAAGACCTGATTTACAGACTTTGAGCTATCTGATTAGCAACTCTGAAACCAAAGAGGATATAAACAAGTATTATGCAGAACTGAAGCGGTCTGGACTCCAACCCACAAAGCAAATTTTCACCACCCTTATAAGTGCGTATGCAGCATGTGGAGAGTTAGACAAGGCAAAAGAGGTGATCTTAGATCCATTGGTACCAGCGAATATCTTGAATGAAATCAAGGGTGTGCTTGTCTCCACTCTTGCATCCCATGGGCAATTGTCTGAGGCTCTTCTTATTTATGAGGAAATAAGGCAAGCTGGACAAAGTTTAGAGCCAAAAACTATTATAAGTCTCATTGAGTGCACTCAATCAGATGGAGAATTAGATATGTTACTCTGGCTACTTGAAGAATTGCATGATTCAGACTACTGGATTGATGGTTGCTGTAGCATTGTCTTGTATTGTATTCGGAACAAGCATATAAGTTCTGCTGTTGACTTGTGTAAGCAACTCAAGGATAAATTTCCCAGTGATGGAGTTATGGAAGTTCTCTTCAAAAAGGTATTTTCTTTTATCGAAGAGTCAGGGTCAACCCATTTGCAGAATGGCGTGGAGTTCCTTTGGGAAATGAAGGATAAGCTTGGTCTTTTCCCTCCAAAAGAGCATCATGATCGTCTTCTAAGAGCTAGTGCCAACGCCCAACGCCACAAATTTCCATGA 2262 0.401 MRASKAKSLGTLGTLIRNTGTFKYSLLSKTVSENCNSRLYSDYVLSSLKLKQASDSEDLPGMVSKRIRSILDSGQLDNRPEPGDVDSAKDLEKISDISRLMKNMSHSTVSLKRKEFSREKKRNCKFESRQSNRFGKLLVSCADKLGAEAVLKLFYKLGRELGVKDYNVLIGMCIGKARETEDEEIAIEEMAKVLHILKSMREKGFLLEEKTYRPLLLHIIEMGMVEEFQFFIDFIKDNNPSSLSRLGYYEMMFWLRVNNEEKIRDVCAYIANNDGADTSELRENYLLALCESHRKKDILQVLETVDIKELSSAESKAKIFQSLGRLLLEPVSEKFLLDFKICGHEAENITNFIASYAVSMPKLAMEDVVSKFKELHQTLKVPPSSSSYEKLILHSCASLKVPIALDIVDEMCEGGFTLSTKVLHSILKTCAETHEYNLAHRIYAIIHRYNLELNDEILRCLIILFTKMKDFESAYKMLDELDERGLKPTTGMYNAIMGEHFREKNIHDGLRALERMQCANIRPDLQTLSYLISNSETKEDINKYYAELKRSGLQPTKQIFTTLISAYAACGELDKAKEVILDPLVPANILNEIKGVLVSTLASHGQLSEALLIYEEIRQAGQSLEPKTIISLIECTQSDGELDMLLWLLEELHDSDYWIDGCCSIVLYCIRNKHISSAVDLCKQLKDKFPSDGVMEVLFKKVFSFIEESGSTHLQNGVEFLWEMKDKLGLFPPKEHHDRLLRASANAQRHKFP 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0565 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Lele12g0565 753 Pfam Pentacotripeptide-repeat region of PRORP 393 550 IPR033443 -
Lele12g0565 753 Gene3D Tetratricopeptide repeat domain 362 540 IPR011990 GO:0005515
Lele12g0565 753 Gene3D Tetratricopeptide repeat domain 598 751 IPR011990 GO:0005515
Lele12g0565 753 TIGRFAM PPR: pentatricopeptide repeat domain 492 524 IPR002885 -
Lele12g0565 753 Gene3D Tetratricopeptide repeat domain 541 583 IPR011990 GO:0005515
Lele12g0565 753 Pfam PPR repeat 560 580 IPR002885 -
Lele12g0565 753 Pfam PPR repeat 596 621 IPR002885 -
Lele12g0565 753 PANTHER OS02G0132600 PROTEIN 37 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0565 Lele-ChrLele12 14094896 14103065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0565 353 652 Glycosyltransferase AT1G05670 21.154 1.90e-11 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0565 12 14094896 14103065 Lele12g0565 12 14094896 14103065 ECH
Lele10g0700 10 5292245 5300511 Lele12g0565 12 14094896 14103065 hybridization