Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0700 ATGCGCGCCTCCAAAGCTAAAAGCCTTGGCACTCTCATACGAAACACTGGCACATTCAAATATTCTCTTCTAAGCAAGCCCGTTTCTGAAAATTGCAATTCTAGACTCTACAGTGATTATGTGCTCTCAAGCCTCAAGCTTAAGCAAGCCTCTGACTCAGAGGATCTGCCCGGTATGGTGTCTAAGCGAATACGCTCAATATTGGACTCCGGTCAGTTGGACAATATACCGGAACCCGGGGATGTTGACAGTGCAAAAGATTTGGAAAAAATATCAGATCTATCTCGCTTGATGAAGAACATGTCTCATAGTACAGTATCTCTGAAACGGAAAGAGTTTTCTCGTGAAAAGAAACGAAATTGTATGTTTGAATCCAGACAATCAAACCGTTTTGGCAAGTTACTCGTATCTTGTGCGGATAAACTAGGAGCAGAGGCTGTGCTTAATTTGTTCTATAAGTTGGGACGAGAACTAGGTGTGAAAGATTACAATGTACTGATAGGAATGTGCATAGGTAAGGCTAGAGAAACTGAAGATGAAGAAATTGCAATAGAAGAAATGGCCAAGGTGTTTCACATCTTAAAATCAATGAGGGAAAAAGGTTTTCTGCTTGAGGAGAAAACTTACCGCCCACTTCTTTTGCATATAATAGAGATGGGCATGGTAGAAGAGTTTCAGTTTTTTATTGACTTTATTAAAGACAACAATCCCAGCTCACTTTCTAGATTGGGTTACTATGAAATGATGCTCTGGTTAAGAGTTAATAATGAAGAAAAGATTCGAGATGTTTGTGCCTATATTGCAAACAATGATGGTGCAGACACTTCAGAATTACGAGAAAATTATTTATTGGCTCTCTGTGAAAGTGATCGGAAGAAGGATATTTTGCTGGTGTTGGAAACTGTAGACATGAAAGAGCTCTCGTCTGCAGAATCTAAAGCAAAGATATTTCAATCATTAGGAAGGCTACTAGTGGAACCTGTTTCAGAGAAGTTCCTTTTGGATTTCAAAATATGTGATCATGAAGCAGATAATATCACAAACTTCATTGCTAGCTATGCTGTTAGCATGCCAAAGTTAGCGATGGAGGATGTCGTCTCAAAATTCAAGGAATTGCACCAGACACTGAAAGTTCCACCTTCATCCTCGTCATATGAGAAGCTTATTTTGCACAGCTGTGACTCATTGAAGGTGCCTATAGCTCTCGATATTGTTGATGAAATGTGTGAAGGAGGCTTTAACTTATCAACGAAGGTGTTGCACTCCATATTACAAACTTGTGCGGAAACCCATGAGTATAATTTGGCCCACCGGATCTACGCCACCATTCGTCAGTACAATTTAGAGTTAAATGATGAAATATTGAGGTGTCTAATAGTTTTGTTCACAAAGCTGAAAGATTTTGAAAGCGCATATAGGATGCTTGATGAGTTGGATGAAAGGGGTTTGAAGCCTACTACGGGAATGTATAATGCTATAATGGGAGAACATTTTCGAGAGAAGAACATTCATGATGGGCTGAGAGCCCTTGAGCGCATGCAGTGTGCCAATATAAGACCTGATTTACAGACTTTGAGCTATCTGATTAGCAACTCTGAAACCAAAGAGGATATAAACAAGTATTATGCAGAACTGAAGCGGTCTGGACTCCAACCCACAAAGCAAATTTTCACCACCCTTATAAGTGCGTATGCAGCATGTGGAGAGTTAGACAGGGCAAAAGAGGTGATCTTAGATCCATTGGTACCAGCCAATATCTTGAATGAAATCAAGGGGGTGCTTGTCTCCACTCTTGCATCCCACGGGCAATTGTCTGAGGCTCTTCTTATTTATGAGGAAATAAGGCAAGCTGGACAAAGTTTGGAGCCAAAAACTATTATAAGTCTCATTGAGCGCACTCAATCAGATGGAGAATTAGAAATATTACTTTGGCTACTTGAAGAATTGCATGATTCAGACTACTGGATTGATGGTTGCTGTAGCCTTGTCTTGTATTGTATTCGGAACAAGCATATAAGTTCTGCTGTTGACTTGTGCAAGCAACTCAAGGATAAATTCCCCAGTGATGGAGTTATGGAAGTTCTCTTCAAAAAGGTATTTTCTTTTATCGAAGAGTCCGGGTCAACCCATTTGCAGAATGGCGTGGAGTTCCTTTGGGAAATGAAGGATAAGCTTGGCCTTTTCCCTCCAAAAGAGTATCATGATCGTCTTATACGAGCTAGTGCCAACGCCCAACGCCACAAATTTCCATGA 2253 0.4043 MRASKAKSLGTLIRNTGTFKYSLLSKPVSENCNSRLYSDYVLSSLKLKQASDSEDLPGMVSKRIRSILDSGQLDNIPEPGDVDSAKDLEKISDLSRLMKNMSHSTVSLKRKEFSREKKRNCMFESRQSNRFGKLLVSCADKLGAEAVLNLFYKLGRELGVKDYNVLIGMCIGKARETEDEEIAIEEMAKVFHILKSMREKGFLLEEKTYRPLLLHIIEMGMVEEFQFFIDFIKDNNPSSLSRLGYYEMMLWLRVNNEEKIRDVCAYIANNDGADTSELRENYLLALCESDRKKDILLVLETVDMKELSSAESKAKIFQSLGRLLVEPVSEKFLLDFKICDHEADNITNFIASYAVSMPKLAMEDVVSKFKELHQTLKVPPSSSSYEKLILHSCDSLKVPIALDIVDEMCEGGFNLSTKVLHSILQTCAETHEYNLAHRIYATIRQYNLELNDEILRCLIVLFTKLKDFESAYRMLDELDERGLKPTTGMYNAIMGEHFREKNIHDGLRALERMQCANIRPDLQTLSYLISNSETKEDINKYYAELKRSGLQPTKQIFTTLISAYAACGELDRAKEVILDPLVPANILNEIKGVLVSTLASHGQLSEALLIYEEIRQAGQSLEPKTIISLIERTQSDGELEILLWLLEELHDSDYWIDGCCSLVLYCIRNKHISSAVDLCKQLKDKFPSDGVMEVLFKKVFSFIEESGSTHLQNGVEFLWEMKDKLGLFPPKEYHDRLIRASANAQRHKFP 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0700 750 Gene3D Tetratricopeptide repeat domain 482 734 IPR011990 GO:0005515
Lele10g0700 750 PANTHER OS02G0132600 PROTEIN 1 745 - -
Lele10g0700 750 TIGRFAM PPR: pentatricopeptide repeat domain 489 521 IPR002885 -
Lele10g0700 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Lele10g0700 750 Pfam Pentacotripeptide-repeat region of PRORP 398 547 IPR033443 -
Lele10g0700 750 Pfam PPR repeat 593 618 IPR002885 -
Lele10g0700 750 Pfam PPR repeat 557 577 IPR002885 -
Lele10g0700 750 Gene3D Tetratricopeptide repeat domain 351 461 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0700 Lele-ChrLele10 5292245 5300511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0700 369 654 Glycosyltransferase AT1G05670 22.945 2.84e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0700 10 5292245 5300511 Lele10g0700 10 5292245 5300511 ECH
Lele10g0700 10 5292245 5300511 Lele12g0565 12 14094896 14103065 hybridization