Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0642 ATGAGAAACATTTCAAATCCAGCATGCTTCTTCATCTTCATTCTTCTTCTAGTAGCAGTTCTTGAGGTTGAAGGCCGTTATCTGCAAACCAGAGCTTCTTCTGCATTGTTAACTTCAGATGGAGTTGACGACGAGGATGGTGTTCAACCCCAGAAGAATTCTCACTTGTTTCGGAGAGGGAATACCAGAAAAACTGAACCTTTTGAAGAAAAGTGTGAGCAAATGTACGGCTTCTTGCCCTGTTCAACTAACATGTTTGGCCATCTCTTTCTGATTCTGGTTTATGAGTTCTTGCTGTTCCATGGAGAATCATACTTGGCTTCTGGGGGTGAGCAAATCTTCAAGATTCTTGGTCCTGGGCTTTTCGGTGCAAGCGCCTTTGATCTTCTTGGTGCCCTTCCTGAGTCTTTGATTCTTCTTGTTACTGGGCTTTCCAGAGAGACCAAGGAGAGTGCACAAGAGTATGCTTCCACTGGAGTTGGTATGTTGGCTGGATCATCCATCTTGCTCCTCACAATAGTTTGGGGAACCTGTGTCATCACTGGCAGTCAAAACTTGAAAACTGACTCATCAAGGCCTAAATCCTCTCATTATTCCACTTCATCAAGTTCAACTCCTAAAGAATTATTAGCTGGGTTTGGGATTACTATGGATAAAGAGACAAAGGAAATGGCAAGAATCATGGTTCTCTCAGTTATACCACTCATAATTATGCAGATTCCCAGCGTGTTTAGTTTCTCTTTAGTGCTTCGCTCTGTGACCTTGATGATTGCTCTTACCGTTACTGTCATTTTTGTCTTCTCGTACTTCATTTATCAGATATTTAAACCTCATATAGAGAAAACAAGGCTAGAATACATAAAGCATCATGATTTAATACTGAGAATTTTCGAGCATGTTGAAAAGCAAACCCTTCAAAAGATCCTCACTGAGGATGGATCTCCCAATGTGGCAGCCATTAATGGGTTATATAACGAAATTAGCAGTCAACACGGTGGAGAGAGGGATTTATCAGCTTCTGAAGTGAGAGAACTTCTTCTCAAGAACAAATTAAGTGGGACAAACATCTCAGAGGCACAAGTTGAAGCCATGTTAAGAGTGTTTGATCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTCGTCACTGGATTAACACAATGGCTTGAGCAAACGAAGCATGCTTTGGATAAACAATACATTCCAAGAAAATCACTCCAGAACATTTATCAGGGTTTTCTCAAGCCATGGATGGAACACACAAGAAAAGAGCGTGAGATGAAGGGACATCTTGTATCTGAAATCTTAAGGCATGCTCAGAGTGATATGGTGGTTGGGCAGCTTCTCCATGATGATGGAACCGCAGATGAGTCTGCTATAAGAAGGTTGTTTGACGAAGTTGATAGCAATGGAGATAACAGTATTTCTCAATCCGAGTTGAGGAAACTAGTGACCAACATGCACTTTGGTAAGGGAGTGAATGAGGAGGAAGCAATCAAGAAAATAGTTCAAGATTTTGATATAAACAGTGACAATGTGATTACTGAGGAAGAATTTGTGGATGGAATCACAAAATGGGTGCTTTCATCTTCCGAACAATCTCCACACTCAAAACCTCTGCATCATGAAGAAGAAAATAAACAAACCTGGGAATCCATAGAGAAGGTTGTGGAAGAGAAGCATCAGCACAAAGGAATACATGGATGGATGATGGCTATAATAAACGTGGTGCTAGGAATCACTATATTATCGATTCTTGCAGAGCCATTAATACACAGTGTCCAAGCATTTTCTGCACAAGCAGGAATCCCATCTTTCTTTGCCTCTTTCATTTTAGTCCCTCTGGCCACAAATTTTAGAGAAGCAACCTCAGCCATCAAAGAAGCAAGCCGCAAGAAGAGAAGTAACACTTCTCACACAATCTATGAGATTTATGGAGCAGTATTTATGAACAACATTCTTGGCTTTGCGGCAATTGCAACTCTGATATATGTGAGAGAAATAGCGTGGGAATTCTCTGCTGAAGTGCTGGTTGTTGCAATAGTCTGTTCTATAATGGGCCTCTCTGCAAGTTTTCGGCACAATTTTCCTCTGTGGACATCCTTTGGCGCATACCTTTTATATTTGCTGTCTTTATTTCTGGTTTATGTTCTCAACAATGTTCTTCATTACGAGTGA 2178 0.4082 MRNISNPACFFIFILLLVAVLEVEGRYLQTRASSALLTSDGVDDEDGVQPQKNSHLFRRGNTRKTEPFEEKCEQMYGFLPCSTNMFGHLFLILVYEFLLFHGESYLASGGEQIFKILGPGLFGASAFDLLGALPESLILLVTGLSRETKESAQEYASTGVGMLAGSSILLLTIVWGTCVITGSQNLKTDSSRPKSSHYSTSSSSTPKELLAGFGITMDKETKEMARIMVLSVIPLIIMQIPSVFSFSLVLRSVTLMIALTVTVIFVFSYFIYQIFKPHIEKTRLEYIKHHDLILRIFEHVEKQTLQKILTEDGSPNVAAINGLYNEISSQHGGERDLSASEVRELLLKNKLSGTNISEAQVEAMLRVFDRNGDQIITKEEFVTGLTQWLEQTKHALDKQYIPRKSLQNIYQGFLKPWMEHTRKEREMKGHLVSEILRHAQSDMVVGQLLHDDGTADESAIRRLFDEVDSNGDNSISQSELRKLVTNMHFGKGVNEEEAIKKIVQDFDINSDNVITEEEFVDGITKWVLSSSEQSPHSKPLHHEEENKQTWESIEKVVEEKHQHKGIHGWMMAIINVVLGITILSILAEPLIHSVQAFSAQAGIPSFFASFILVPLATNFREATSAIKEASRKKRSNTSHTIYEIYGAVFMNNILGFAAIATLIYVREIAWEFSAEVLVVAIVCSIMGLSASFRHNFPLWTSFGAYLLYLLSLFLVYVLNNVLHYE 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0642 725 Pfam Sodium/calcium exchanger protein 575 716 IPR004837 GO:0016020|GO:0055085
Lele11g0642 725 Pfam EF-hand domain pair 353 385 IPR002048 GO:0005509
Lele11g0642 725 ProSiteProfiles EF-hand calcium-binding domain profile. 494 529 IPR002048 GO:0005509
Lele11g0642 725 ProSitePatterns EF-hand calcium-binding domain. 507 519 IPR018247 -
Lele11g0642 725 CDD EFh 460 524 IPR002048 GO:0005509
Lele11g0642 725 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 68 717 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele11g0642 725 MobiDBLite consensus disorder prediction 185 205 - -
Lele11g0642 725 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Lele11g0642 725 SMART efh_1 498 526 IPR002048 GO:0005509
Lele11g0642 725 SMART efh_1 459 487 IPR002048 GO:0005509
Lele11g0642 725 SMART efh_1 360 388 IPR002048 GO:0005509
Lele11g0642 725 Gene3D - 314 396 - -
Lele11g0642 725 Gene3D - 397 538 - -
Lele11g0642 725 SUPERFAMILY EF-hand 337 529 IPR011992 -
Lele11g0642 725 CDD EFh 337 386 IPR002048 GO:0005509
Lele11g0642 725 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Lele11g0642 725 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Lele11g0642 725 Pfam EF-hand domain pair 458 521 IPR002048 GO:0005509
Lele11g0642 725 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0642 Lele-ChrLele11 6213989 6219272 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0642 409 719 EF-hand Containing Proteins AT1G53210 40.000 3.07e-63 219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0642 11 6213989 6219272 Lele11g0642 11 6213989 6219272 ECH
Lele09g0631 09 4818532 4823887 Lele11g0642 11 6213989 6219272 hybridization