Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0631 ATGAGAAACATTTCAAAACCAGCATGCTTCTTCATCTTCATTCTTCTTCTAGTAGCAGTTCTTGAGGTTGAAGGCCGTTATCTGCAAACCAGAGCTTCTTCTGCACTGTTAACTTCAGATGGAGTTGACGACGAGGATGGTGTTCAACCCCAGAAGAATTCTCACTTGTTTGTCAGAGGGAATACCAGAAAAACCGAACCTTTTGAAGAAAAGTGTGAGCAAATGTACGGCTTCTTGCCCTGTTCAACTAACATGTTTGGCCATCTCTTTCTGATTCTGGTTTATGAGTTCTTGTTGTTCCATGGAGAATCATACTTGGCTTCTGGGGGTGAGCAAATCTTCAAGATTCTTGGTCCTGGGCTTTTCGGTGCAAGTGCCTTTGATCTTCTTGGTGCCCTTCCTGAGTCTTTGATTCTCCTTGTTACTGGGCTTTCCAGAGAGACCAAGGAGAGTGCACAAGAGTATGCTTCCACTGGAGTTGGCATATTGGCTGGATCATCCATCTTGCTCCTCACAATAGTTTGGGGAACCTGTGTCATCACTGGCAGGCAAAACTTGAAAACTGACTCATCAAGGCCTAAATCCTCTCATTATTCAACTTCATCAAGTTCAACTCTTAAAGAATTATTAGCTGGGTTTGGGATTACTATGGATAAAGAGACAAAGGAAATGGCAATAATCATGGTTCTCTCAGTTATACCACTCATAATTATGCAGATTCCCAGCGTGTTTAGTTTCTCTTCAGTGCTTCGCTCTATGACCTTGATGATTGCTCTTACCGTTACTGTCATTTTTGTCTTCTCATACTTCATTTATCAGATATTTAAACCTCATATAGAGAAAACAAGGCTAGAATACATAAAGCATCATGATTTAATACTGAGAATTTTCGAGCATGTTGAAAAGCAAACCCTTCAAAAGATCCTCACTGAGGATGGATCTCCCAATGTGGCAGCCATTAATGGGCTATATAACGAAATTAGCAGTCAACACGGTGGAGAGAGGGATTTATCAGCTTCTGAAGTTAGAGAGCTTCTTCTCAAGAACAAATTAACTGGGACAAACATCTCAGAGGGACAAGTTGAAGCCATGTTAAGAGTGTTTGATCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTCGTCACTGGATTAACACAATGGCTTGAGCAAACAAAGCATGCTTTGGATAAACAATACATTCCAAGAAAATCACTCCAGAACATTTATCAGGGTTTTCTCAAGCCATGGATGGAACACACAAGAAAAGAGCGTGAGATGAAGGGACATCTTGTATCTGAAATCTTAAGGCATGCTCAGAGTGATATGGTGGTTGGGCAGCTTCTCCATGATGATGGAACCGCAGATGAGTCTGCTATAAGAAGGTTGTTTGAGGAAGTTGATAGCAATGGAGATAACAGTGTTTCTCAATCCGAGTTGAGGAAACTAGTGACCAACATGCACTTTGGTAAGGGAGTGAATGAGGAGGAAGCAATCAAGAAAATAGTTCAAGATTTTGATATAAACAGCGACAATGTGATTACTGAGGAAGAATTTGTGGATGGAATCACAAAATGGGTGCTTTCATCTTCCGGACAATCTCCACAGTCAAAACCTCTGCATCATGAAGAGGAAAATCATCAAACCTGGGAATACGTAGAGAAGGTTGTGGAAGAGAAGCATCAGCACAAAGGAATACATGGATGGATGATGGCTATAATAAACGTGGTGCTAGGAATCACTATATTATCTATCCTTGCAGAGCCATTAATACATAGTGTCCAGGCATTTTCTGCACAAGCAGGAATCCCATCTTTCTTTGCCTCTTTCATTTTAGTCCCTCTGGCCACAAATTTTAGAGAAGCAACCTCAGCCATCAAAGAAGCAAGCCACAAGAAGAGAAGTAACACTTCTCACACAATCTATGAGATTTATGGAGCAGTATTTATGAACAACATTCTTGGATTTGCGGCAATTGCCACTCTGATATATGTGAGAGAAATAGCATGGGAATTCTCAGCTGAAGTGCTGGTTGTTGCAATAGTCTGTTCTATAATGGGCCTCTCTGCAAGTTTTCGGCACAATTTTCCTTTGTGGACATCCTTCGGCGCATACCTTTTATATTTGCTGTCTTTAGTTCTGGTTTATGTTCTCAACAATGTTCTTCATTATGAGTGA 2178 0.4082 MRNISKPACFFIFILLLVAVLEVEGRYLQTRASSALLTSDGVDDEDGVQPQKNSHLFVRGNTRKTEPFEEKCEQMYGFLPCSTNMFGHLFLILVYEFLLFHGESYLASGGEQIFKILGPGLFGASAFDLLGALPESLILLVTGLSRETKESAQEYASTGVGILAGSSILLLTIVWGTCVITGRQNLKTDSSRPKSSHYSTSSSSTLKELLAGFGITMDKETKEMAIIMVLSVIPLIIMQIPSVFSFSSVLRSMTLMIALTVTVIFVFSYFIYQIFKPHIEKTRLEYIKHHDLILRIFEHVEKQTLQKILTEDGSPNVAAINGLYNEISSQHGGERDLSASEVRELLLKNKLTGTNISEGQVEAMLRVFDRNGDQIITKEEFVTGLTQWLEQTKHALDKQYIPRKSLQNIYQGFLKPWMEHTRKEREMKGHLVSEILRHAQSDMVVGQLLHDDGTADESAIRRLFEEVDSNGDNSVSQSELRKLVTNMHFGKGVNEEEAIKKIVQDFDINSDNVITEEEFVDGITKWVLSSSGQSPQSKPLHHEEENHQTWEYVEKVVEEKHQHKGIHGWMMAIINVVLGITILSILAEPLIHSVQAFSAQAGIPSFFASFILVPLATNFREATSAIKEASHKKRSNTSHTIYEIYGAVFMNNILGFAAIATLIYVREIAWEFSAEVLVVAIVCSIMGLSASFRHNFPLWTSFGAYLLYLLSLVLVYVLNNVLHYE 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0631 725 Gene3D - 314 397 - -
Lele09g0631 725 ProSiteProfiles EF-hand calcium-binding domain profile. 494 529 IPR002048 GO:0005509
Lele09g0631 725 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 68 717 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele09g0631 725 ProSitePatterns EF-hand calcium-binding domain. 507 519 IPR018247 -
Lele09g0631 725 Pfam Sodium/calcium exchanger protein 575 716 IPR004837 GO:0016020|GO:0055085
Lele09g0631 725 CDD EFh 460 524 IPR002048 GO:0005509
Lele09g0631 725 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Lele09g0631 725 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Lele09g0631 725 SMART efh_1 459 487 IPR002048 GO:0005509
Lele09g0631 725 SMART efh_1 498 526 IPR002048 GO:0005509
Lele09g0631 725 SMART efh_1 360 388 IPR002048 GO:0005509
Lele09g0631 725 CDD EFh 337 386 IPR002048 GO:0005509
Lele09g0631 725 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Lele09g0631 725 Pfam EF-hand domain pair 353 385 IPR002048 GO:0005509
Lele09g0631 725 SUPERFAMILY EF-hand 337 528 IPR011992 -
Lele09g0631 725 Gene3D - 398 552 - -
Lele09g0631 725 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Lele09g0631 725 Pfam EF-hand domain pair 458 521 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0631 Lele-ChrLele09 4818532 4823887 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0631 409 719 EF-hand Containing Proteins AT1G53210 40.361 7.01e-64 221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0631 09 4818532 4823887 Lele09g0631 09 4818532 4823887 ECH
Lele09g0631 09 4818532 4823887 Lele11g0642 11 6213989 6219272 hybridization