Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0611 ATGGTTGTTGAGGTTGCTGATTTGGAGATGGTTCAAGGCCCCGTGGACAAAGGTGCTGAACGAGACAAAGCTGTTTTTCCTGGAAAGGAAAATGGACATTTAGAAAAGGATCCTGGAGTAGCTGAGTCCATAAAATTGGGGTCACATGAAGACGAACCTACTAAAGAACGGAATAAAATTTCAGATTCCAGTCGGGGTGGTTTATGCTCATCTGAGGAGGAACTGAATGATACTATATATGGATTGCGGTACCGGAGACAACATGAGAGTATTCCATTGTCTGAGGAAAAACAACTCCTTCGTGAAATCAAACAGCTTGAGGGGAAAAGGGAGAAAGTTATTGCTAATGCTTCCATGAGGGCCAAATTACAGGATTCACTGGGGCAGAAAGAAGCCATTCAAGATCAGGTTAAGAATAGCTATTTCTACCAAAGCCGTGCCCTTTTGAATAAAGCGAGGGAGCTTGCTGCGAAGAAAGATATTAGAGCTCTTGAGGAACTTTCACAAGCAGAGGTTGAGAAATTTATGTCACTCTGGAGCAGTGACAAGGCTTTCAGGAATGATTATGAGAGAAGAATTTTGCCTTCATTAGATATTCGACAATTGAGTAGGGATGGGCGGATTAGGAATCCAGATGAAAAGCCACTGTTGGAAGAGTCAAAACCTGTTGAAACTGATACTGTGCCAAAGATCAGCAAAAATCAGCTAAAGGAAGAGCCAAAATCTTCTTCTCCAAAAGATAGTTTGCCCGCTCAGAAATTACTGGGTGTGGGGTGCATCTGCTGCTTTGTTACTGTTGCTGTTGGTGGTGCTCGGTTACTACTATCTTTACTAGTAAAGTCTGGACTTATCCGTGTAAGCCAGACAGTACAAGCTTTGAAGGGACGGGAAGGCTCAAAGGGCATCATCAAGACGAGAAGTTCTTCATACAGATTTTCTTACCCCTCCAGTGCTGAAGGAGTCTATGGAAGTAATGGGAAAATAAGCAGGTGTGAAAGCAATTGCTCAAGGAGGTTATCCACAGGAAACTTTCAGTTTGAACCTTGTTCTCATGGCGACTTCCTTGGTGCAATCCTTGGTACAGGAATCACCAGGGAGAAACTTGGAGATATAATATTGCAGGGTTCTCAGATACTTATTGTTCCCGAACTTGTTGATTATGTCATATCATCACTCGGTAAGGTTGGTAATGTTTCTGTATCTTGTAGCAAGATACCATTAATTTCTCTTGATTATGAACAACCAAGGACCAAGTCATCTAAAACCATAGAAGCATCATTAAGAGTTGATGCATTAGCGAGCGCTGGGTTCAAAATTTCACGCTCAAAGCTAGTTGACCTTATCAGAGATGGTGCTGTTCATGTAAACTGGGTCCCTGTAACCACCAAAGGAGCCACGCTCAAGAGTGGAGATGTTGTATCTGTTAGTGGAAGGGGAAGATTGAAGATAGGTGAAATAAACTCAACAAAGAAAGGAAAGTTTGCAGGGGAGTTGATTCGGTATTTGTAA 1509 0.4235 MVVEVADLEMVQGPVDKGAERDKAVFPGKENGHLEKDPGVAESIKLGSHEDEPTKERNKISDSSRGGLCSSEEELNDTIYGLRYRRQHESIPLSEEKQLLREIKQLEGKREKVIANASMRAKLQDSLGQKEAIQDQVKNSYFYQSRALLNKARELAAKKDIRALEELSQAEVEKFMSLWSSDKAFRNDYERRILPSLDIRQLSRDGRIRNPDEKPLLEESKPVETDTVPKISKNQLKEEPKSSSPKDSLPAQKLLGVGCICCFVTVAVGGARLLLSLLVKSGLIRVSQTVQALKGREGSKGIIKTRSSSYRFSYPSSAEGVYGSNGKISRCESNCSRRLSTGNFQFEPCSHGDFLGAILGTGITREKLGDIILQGSQILIVPELVDYVISSLGKVGNVSVSCSKIPLISLDYEQPRTKSSKTIEASLRVDALASAGFKISRSKLVDLIRDGAVHVNWVPVTTKGATLKSGDVVSVSGRGRLKIGEINSTKKGKFAGELIRYL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0611 502 MobiDBLite consensus disorder prediction 1 72 - -
Lele10g0611 502 Pfam Putative RNA-binding domain in YlmH 345 407 IPR040591 -
Lele10g0611 502 MobiDBLite consensus disorder prediction 208 244 - -
Lele10g0611 502 CDD S4 428 482 - -
Lele10g0611 502 ProSiteProfiles S4 RNA-binding domain profile. 427 487 - -
Lele10g0611 502 SUPERFAMILY Alpha-L RNA-binding motif 345 490 - -
Lele10g0611 502 Gene3D - 332 410 IPR012677 -
Lele10g0611 502 Coils Coil 96 116 - -
Lele10g0611 502 Pfam S4 domain 431 473 IPR002942 GO:0003723
Lele10g0611 502 Gene3D - 421 478 IPR036986 GO:0003723
Lele10g0611 502 MobiDBLite consensus disorder prediction 14 62 - -
Lele10g0611 502 MobiDBLite consensus disorder prediction 208 248 - -
Lele10g0611 502 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 59 138 - -
Lele10g0611 502 SMART s4_6 427 484 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0611 Lele-ChrLele10 4505322 4514447 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0611 10 4505322 4514447 Lele10g0611 10 4505322 4514447 ECH
Lele10g0611 10 4505322 4514447 Lele11g0683 11 6498341 6502982 hybridization
Lele10g0611 10 4505322 4514447 Lele12g0658 12 14875376 14884211 hybridization