Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0878 ATGAGTCGCTACGACAATCCTTTCGACGAGGATGTGAATCCCTTTGCGGGTGGATCAAGCAGAGGAAAATCGTCGGGGAAATCAAATAATGATGAAGGTGGATTCTCTAATATTTTCTCACAATTTCCTCTTGAGACTTATGATCTTGGTGCCATTATTGATATTCCACTTTTTGACATCTCAAAGGACCTCAAAGCAAAGGAAGCGGAACTTAAAGCCAAAGAAGCTGAACTGTCTAGGAGGGAACAGGAAGTAAAACGAAAGGAAGATGCTATAGCACGGGCTGGAATAACTTTAGAGGTAAAAAATTGGCCATCTTTCTTCCCCATCATTCATCACGACATCGCAAGTGATATACCAATACATCTTCAGAGGATGCAATATGTTGCATTCTCAACACTTCTGGGACCTGCAATCTTGTTCCTCGCTATTATCTACGTCATTTGTGGCATTCCAGGAGCCTACGTATTATGGTATCGCCCTCTTTATCGTTCTATGAGGACTGACAGTGCTCTCAAGTTTGGCTGGTTTTTTCTAAGTTACATGATCCACATTGGTTTCTGCATTTACGCTTCAATTGCCCCTCCATTTGTCCTTGCAGGACATTCTCTCACAGGATTTTTTCCTGCCCTAAATTTTATTGGCGACCGTCACATGCTTGGGATACTATACTTTGTTGGGTTTGCATTGTTCCTCGCGGAGACTCTGCTGAGCATCTACGTTATTCAGCAAGTACTAATGTACTTCCGTGGAAGTGGCAAGGCTGCAGAAGCTAGGCGTGAGGCGGCGAGAAGCACCGTCATGGCAGCTCTATGA 816 0.44 MSRYDNPFDEDVNPFAGGSSRGKSSGKSNNDEGGFSNIFSQFPLETYDLGAIIDIPLFDISKDLKAKEAELKAKEAELSRREQEVKRKEDAIARAGITLEVKNWPSFFPIIHHDIASDIPIHLQRMQYVAFSTLLGPAILFLAIIYVICGIPGAYVLWYRPLYRSMRTDSALKFGWFFLSYMIHIGFCIYASIAPPFVLAGHSLTGFFPALNFIGDRHMLGILYFVGFALFLAETLLSIYVIQQVLMYFRGSGKAAEARREAARSTVMAAL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0878 271 Coils Coil 57 91 - -
Lele09g0878 271 MobiDBLite consensus disorder prediction 1 32 - -
Lele09g0878 271 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 137 267 IPR007273 GO:0015031|GO:0016020
Lele09g0878 271 Pfam SCAMP family 139 251 IPR007273 GO:0015031|GO:0016020
Lele09g0878 271 Pfam SCAMP family 102 135 IPR007273 GO:0015031|GO:0016020
Lele09g0878 271 MobiDBLite consensus disorder prediction 18 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0878 Lele-ChrLele09 7083912 7087767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0878 53 271 Miscellaneous Gene Families AT2G20840 61.250 7.70e-100 290
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0515 29 3118508 3128026 Lele09g0878 09 7083912 7087767 CCT
Lele30g0896 30 12817095 12818894 Lele09g0878 09 7083912 7087767 CCT
Lele09g0878 09 7083912 7087767 Lele11g0884 11 8948061 8951659 hybridization
Lele09g0878 09 7083912 7087767 Lele12g0458 12 12466704 12470862 hybridization