Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0690 ATGGAAGCGTATTTATATGAAGACTCTTCCATGGATCGGCTGCTAAAAGCTGCAAGAGCATCCGGTTCCCTTAACCTCTCAAATCGCTCACTGAGGGAAGTTCCAAATGAGGTGTATCGGAATTTGGAGGGCGGCGGCGGCGATGATAAGTGGTGGGAGGCCGTGGATCTCCAAAAGGTCATCTTGGCTCATAATGATATTGAATCGTTAAAGGAAGATCTTAGAAACTTAATTTCACTAACTGTGTTGAACGTTAGCCACAACAGACTTTATGAGCTACCAGCTGCAATAGGAGAGCTAGCTCAGCTAAAGTTGTTAGATGTTTCGTTCAATTTGATAAATAAAATACCAGAGGAAATTGGATCAGCAGCATCACTTGTTAAGCTTGATTTCTCTAACAATCAACTGAAGGAGCTTCCGAGCTCAGTTGGCCAATGTATAGAATTGTCAGAATTGAAGGGATCAAACAACCTCATTGCCAACTTACCAGATGGTTTAGCAAATTGTTCAAAATTGACAAAGCTAGACATGGAGGGAAACAAACTAACAGTGATACCTGAAAACCTCATTTCTTCATGGACCAAGCTTACTGAATTGAATGCATGTAAGGCAAAAAACTTACTGAATGGCATACCAGTCAGCATCGGAGGTCTTTCTCATCTAATTCGACTTGACCTCCATCAGAACAGAATCTCATCAATCCCTTCATCAATCATGGGCTGCCATTCACTTGCAGAGTTTTATTTGGGGAATAACAACCTTTCTGCTGTACCAGCGGAAATAGGGACACTCTCACGTCTAGGGACTTTAGATCTTCACTCTAACCAGTTGAAGGAGTATCCAGTAGAGGCTTGCAAGTTGGGTCTTTTAGTCTTAGATCTTTCAAACAATTCATTGAGTGGCTTACCTGCTGAATTGGGCAAGATGACTACCTTGAGGAAACTTTTGCTTGCGGGTAATCCTTTGCGGACTCTTCGAAGCTCATTAGTCTCTGGACCTACACCAGCTCTACTGAAGTTTCTTCGAAGTAGACTTTCTGAGGGTGAAGAGTCTGAATCTACAATCAGTATAAAAGAGGATGTAATTGCAAAGGCTACTAGATTGTCTATCACTTCAAAGGAACTTTCTTTGGAAGGGATGGGGTTGAGTGCCGTTCCTTCAGAAATATGGGAATTAGGGGAGATGATAAAAGTTGATCTTTCAAGAAATTCCATTGAGGAGTTGCCAATGGAGCTCTCCTCTTGTGTTTCCCTCCAGACGCTGATTTTATCTAAGAACAAAATTAAAGATTGGCCTGGTTCAATTCTTAAATCACTTTCAAGTCTTTCTTGTTTGAAGCTGGACAACAATCCCCTGAGACAGATTCCTTCAGATGGTTTCAAAACTGTGCCTATGCTTCAGATTCTTGATCTAAGTGGTAATGCAGCTTCACTGCCAAATAGTCCTGCATTCTCTAGCATGCCACATCTGCAAGAGCTTTACCTGAGAAGAATGCAACTAAGTGAAGTCCCCTCAGATGTATTGGTGCTATCTCAACTGCGAATCCTTGACTTGAGTCAAAATTCCCTTCAATCAATCCCATTGGGCTTCAAAAATCTCACTTCTCTCACGGAGCTTGACCTATCTAATAATAACGTCTCCGCCCTTCCCCCTGAACTGGGTTTGCTGGAAACAAGCCTTCAAGCATTGAGACTTGACGGAAATCCTCTCCGAAGCATTCGGAGGACTATCTTGGATAAAGGAACGAAAGCTGTTCTGAAATATTTGAAGGACAAATTGCCAGAGCAATAG 1791 0.4216 MEAYLYEDSSMDRLLKAARASGSLNLSNRSLREVPNEVYRNLEGGGGDDKWWEAVDLQKVILAHNDIESLKEDLRNLISLTVLNVSHNRLYELPAAIGELAQLKLLDVSFNLINKIPEEIGSAASLVKLDFSNNQLKELPSSVGQCIELSELKGSNNLIANLPDGLANCSKLTKLDMEGNKLTVIPENLISSWTKLTELNACKAKNLLNGIPVSIGGLSHLIRLDLHQNRISSIPSSIMGCHSLAEFYLGNNNLSAVPAEIGTLSRLGTLDLHSNQLKEYPVEACKLGLLVLDLSNNSLSGLPAELGKMTTLRKLLLAGNPLRTLRSSLVSGPTPALLKFLRSRLSEGEESESTISIKEDVIAKATRLSITSKELSLEGMGLSAVPSEIWELGEMIKVDLSRNSIEELPMELSSCVSLQTLILSKNKIKDWPGSILKSLSSLSCLKLDNNPLRQIPSDGFKTVPMLQILDLSGNAASLPNSPAFSSMPHLQELYLRRMQLSEVPSDVLVLSQLRILDLSQNSLQSIPLGFKNLTSLTELDLSNNNVSALPPELGLLETSLQALRLDGNPLRSIRRTILDKGTKAVLKYLKDKLPEQ 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0690 596 Pfam BspA type Leucine rich repeat region (6 copies) 126 202 IPR026906 -
Lele09g0690 596 FunFam Leucine-rich repeat-containing protein 40 484 592 - -
Lele09g0690 596 Pfam Leucine rich repeat 417 474 IPR001611 GO:0005515
Lele09g0690 596 Pfam Leucine rich repeat 488 545 IPR001611 GO:0005515
Lele09g0690 596 Pfam Leucine rich repeat 57 113 IPR001611 GO:0005515
Lele09g0690 596 Pfam Leucine rich repeat 212 254 IPR001611 GO:0005515
Lele09g0690 596 Pfam Leucine rich repeat 266 322 IPR001611 GO:0005515
Lele09g0690 596 PRINTS Leucine-rich repeat signature 510 523 - -
Lele09g0690 596 PRINTS Leucine-rich repeat signature 289 302 - -
Lele09g0690 596 ProSiteProfiles Leucine-rich repeat profile. 535 556 IPR001611 GO:0005515
Lele09g0690 596 SMART LRR_typ_2 510 532 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 218 241 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 124 146 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 487 508 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 309 332 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 100 123 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 439 462 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 288 308 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 77 98 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 416 438 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 392 415 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 264 287 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 169 192 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 533 556 IPR003591 -
Lele09g0690 596 SMART LRR_typ_2 558 580 IPR003591 -
Lele09g0690 596 Gene3D Ribonuclease Inhibitor 16 117 IPR032675 -
Lele09g0690 596 Gene3D Ribonuclease Inhibitor 118 204 IPR032675 -
Lele09g0690 596 Gene3D Ribonuclease Inhibitor 286 340 IPR032675 -
Lele09g0690 596 Gene3D Ribonuclease Inhibitor 341 477 IPR032675 -
Lele09g0690 596 Gene3D Ribonuclease Inhibitor 478 592 IPR032675 -
Lele09g0690 596 SMART LRR_sd22_2 100 122 - -
Lele09g0690 596 SMART LRR_sd22_2 169 191 - -
Lele09g0690 596 SMART LRR_sd22_2 218 243 - -
Lele09g0690 596 SMART LRR_sd22_2 510 535 - -
Lele09g0690 596 SMART LRR_sd22_2 415 444 - -
Lele09g0690 596 SMART LRR_bac_2 218 237 - -
Lele09g0690 596 SMART LRR_bac_2 100 119 - -
Lele09g0690 596 SMART LRR_bac_2 169 188 - -
Lele09g0690 596 SMART LRR_bac_2 510 529 - -
Lele09g0690 596 SMART LRR_bac_2 77 96 - -
Lele09g0690 596 SMART LRR_bac_2 533 553 - -
Lele09g0690 596 SMART LRR_bac_2 286 305 - -
Lele09g0690 596 SMART LRR_bac_2 123 142 - -
Lele09g0690 596 SUPERFAMILY L domain-like 373 575 - -
Lele09g0690 596 SUPERFAMILY L domain-like 54 330 - -
Lele09g0690 596 ProSiteProfiles Leucine-rich repeat profile. 125 146 IPR001611 GO:0005515
Lele09g0690 596 ProSiteProfiles Leucine-rich repeat profile. 220 241 IPR001611 GO:0005515
Lele09g0690 596 ProSiteProfiles Leucine-rich repeat profile. 417 438 IPR001611 GO:0005515
Lele09g0690 596 Gene3D Ribonuclease Inhibitor 205 285 IPR032675 -
Lele09g0690 596 ProSiteProfiles Leucine-rich repeat profile. 512 534 IPR001611 GO:0005515
Lele09g0690 596 PANTHER - 155 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0690 Lele-ChrLele09 5236811 5244473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0690 51 553 Receptor kinase-like Gene Family AT4G08850 29.329 8.21e-33 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0690 09 5236811 5244473 Lele09g0690 09 5236811 5244473 ECH
Lele09g0690 09 5236811 5244473 Lele11g0700 11 6642957 6650661 hybridization
Lele09g0690 09 5236811 5244473 Lele12g0637 12 14730750 14739999 hybridization