Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0667 ATGCTAATGAATGCTAAACTTAATAGACCATATGATTATTGTTGTAGGTGCTGTCGGGTTGGGGAAGCGCACCCCGCCATGGCTGCCGCTAGCTTGGTAACGCCCCGGTTTCTGAGCAGAGCAGCTCAGTCTTTTGCATCCTCTGCTCTTCGTTACAACGCTAAACTCTCTTTTCGGAGGACAATTTCTTCTGACCCTTTCGATGTTTCTTGTCCTTCAGCTTCAGGTGTAAGCCAGACAGTACAAGCTTTGAAGGGACAGGAAGGTGATGTGCTACTCAGGGGAGTAAAAGAGAAAAGCACAATAAAAGAAGTGAAGCATATTCTTGAGATGGCTCAAAGGGCATCATCAAGACGAGAAGTTCTTCATACAAATTTTCTTACCCCTCCAGTGATGAAGGAATCTATGGAAGTAATGGGAAAATTAGCAGGTGTGAAAGCAATTGCTCAAGGAGGTTATCCACAGGCTGAACGCTGCCGTATTTCTGTTGGACATCCAGAAGAATTGACAAGTGACCCAGATATAATTGCAGCACTGAGCATTACAGGAAACTTCCAGTTTGAACCTTGTTCTCATGGTGACTTCCTTGGCGCAATCCTTGGTACAGGAATCACCAGGGAGAAACTTGGAGATATAATATTGCAGGGTGAACAGGGTGCTCAGATACTTACCGTTCCGGAACTTGTTGATTATGTCATATCATCACTGGGTAAGGTTGGCAATGTTTCTGTATCTTGCAGCAAGATACCATTAATTTCTCTTGATTATGAACCACCAAGAACCAAGTCATTTAAAACCGTAGAAGCATCATTAAGAGTTGATGCATTAGCAAGTGCTGGGTTCAAAATTTCACGTTCAAAACTAGTTGACCTGATCAGCGATGGGGCTGTTCGTGTAAACTGGGTCCCTGTAACTACCAAAGGAGCCACGCTCAAGAGTGGAGATATTGTATCTGTTAGTGGAAGGGGAAGATTAAAGATAGGAGAAATAAACTCAACAAAGAAAGGAAAGTTTGCAGTGGAGTTGATTCGTTATTTGTAA 1041 0.4313 MLMNAKLNRPYDYCCRCCRVGEAHPAMAAASLVTPRFLSRAAQSFASSALRYNAKLSFRRTISSDPFDVSCPSASGVSQTVQALKGQEGDVLLRGVKEKSTIKEVKHILEMAQRASSRREVLHTNFLTPPVMKESMEVMGKLAGVKAIAQGGYPQAERCRISVGHPEELTSDPDIIAALSITGNFQFEPCSHGDFLGAILGTGITREKLGDIILQGEQGAQILTVPELVDYVISSLGKVGNVSVSCSKIPLISLDYEPPRTKSFKTVEASLRVDALASAGFKISRSKLVDLISDGAVRVNWVPVTTKGATLKSGDIVSVSGRGRLKIGEINSTKKGKFAVELIRYL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0667 346 TIGRFAM PS_II_S4: photosystem II S4 domain protein 100 344 IPR017506 -
Lele09g0667 346 CDD S4 272 326 - -
Lele09g0667 346 ProSiteProfiles S4 RNA-binding domain profile. 271 331 - -
Lele09g0667 346 Gene3D - 265 322 IPR036986 GO:0003723
Lele09g0667 346 Pfam S4 domain 275 317 IPR002942 GO:0003723
Lele09g0667 346 Gene3D - 172 254 IPR012677 -
Lele09g0667 346 PANTHER UNCHARACTERIZED 180 345 IPR039167 -
Lele09g0667 346 SMART s4_6 271 328 IPR002942 GO:0003723
Lele09g0667 346 Pfam Putative RNA-binding domain in YlmH 177 251 IPR040591 -
Lele09g0667 346 SUPERFAMILY Alpha-L RNA-binding motif 130 334 - -
Lele09g0667 346 Gene3D - 97 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0667 Lele-ChrLele09 5078098 5087598 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0667 09 5078098 5087598 Lele09g0667 09 5078098 5087598 ECH
Lele09g0667 09 5078098 5087598 Lele11g0682 11 6492634 6496969 hybridization