Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1163 ATGGGTCAGGGAACTCCGGGTGGTCTCAACCGTGGCGGCCTTCCGGGAGACCGGAAACAGGATGGTAGCGGCAAGAAGGAGAAGAAGTTTGAGCCGGCGGCTCCGCCGGCACGAGTCGGTCGTAAGCAGCGAAAGCAGAAGGGTCCCGAGGCGGCTGCTCGTTTGCCTACAGTGACGCCCCTCACTAAGTGCAAGCTCCGGCTGTTAAAGCTTGAACGAATCAAGGATTACTTGTTGATGGAGGAAGAATTTGTGGCTAATCAGGAGCGTCTCAAGCCTCAGGAGGAGAAGGCCGAGGAGGACAGATCCAAAGTCGATGACCTTAGGGGTTCGCCTATGAGCGTTGGTAGCTTGGAGGAGCTTATAGACGAGAACCATGCCATTGTTTCATCTTCGGTCGGGCCGGAGTACTATGTGGGGATCTTGTCCTTTGTGGATAAGGATCAATTAGAGCCTGGATGTGCAATTTTGATGCACAATAAGGTGCTTTCCGTTGTTGGGCTTCTACAAGATGAAGTGGATCCAATGGTCTCCGTTATGAAGGTTGAGAAAGCTCCTTTGGAATCTTATGCTGACATTGGTGGTTTAGATGCTCAGATACAGGAAATTAAAGAAGCAGTTGAGCTTCCCCTGACACATCCCGAGCTATATGAAGACATTGGTATCAAGCCTCCTAAGGGGGTTATATTATATGGAGAACCTGGAACAGGGAAGACTTTGCTTGCAAAGGCTGTGGCAAACTCAACATCGGCAACTTTTTTACGTGTTGTTGGTAGTGAATTGATACAAAAGTACTTGGGTGATGGTCCAAAGCTTGTGAGGGAACTTTTCAGAGTTGCTGATGATCTTTCCCCTTCTATTGTCTTCATTGATGAAATTGATGCTGTAGGTACTAAGAGGTATGATGCTCACTCTAGTGGGGAGCGTGAAATTCAAAGGACAATGTTGGAGTTGCTGAACCAGTTGGATGGTTTTGATTCAAGAGGAGATGTTAAAGTGATTCTAGCTACCAACAGAATTGAGAGTCTTGATCCCGCTTTGCTGCGACCTGGTCGAATAGACAGGAAGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTCCAGATACATACATCGAGGATGACATTAGCTGATGACGTCAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTCTCTGGTGCTGATATAAAGGCAATATGTACTGAAGCTGGCTTACTCGCTTTAAGAGAACGCCGTATGAAGGTAACGCATGCTGACTTCAAGAAGGCAAAAGATAAGGTGATGTTTAAGAAGAAAGAAGGGGTGCCAGAAGGACTTTATATGTGA 1341 0.4653 MGQGTPGGLNRGGLPGDRKQDGSGKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGSLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSSGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1163 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 439 IPR027417 -
Lele08g1163 446 Pfam Proteasomal ATPase OB C-terminal domain 115 168 IPR032501 -
Lele08g1163 446 Pfam AAA+ lid domain 383 427 IPR041569 -
Lele08g1163 446 MobiDBLite consensus disorder prediction 1 54 - -
Lele08g1163 446 MobiDBLite consensus disorder prediction 90 110 - -
Lele08g1163 446 Gene3D - 366 440 - -
Lele08g1163 446 MobiDBLite consensus disorder prediction 18 35 - -
Lele08g1163 446 FunFam 26S proteasome regulatory subunit 4 181 361 - -
Lele08g1163 446 FunFam 26S proteasome regulatory subunit 4 366 442 - -
Lele08g1163 446 ProSitePatterns AAA-protein family signature. 331 349 IPR003960 GO:0005524|GO:0016887
Lele08g1163 446 CDD AAA 194 361 - -
Lele08g1163 446 FunFam 26S protease regulatory subunit 4 79 180 - -
Lele08g1163 446 MobiDBLite consensus disorder prediction 90 108 - -
Lele08g1163 446 Gene3D - 181 361 IPR027417 -
Lele08g1163 446 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 45 437 - -
Lele08g1163 446 SMART AAA_5 224 363 IPR003593 -
Lele08g1163 446 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 81 433 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lele08g1163 446 Gene3D - 113 180 IPR012340 -
Lele08g1163 446 Pfam ATPase family associated with various cellular activities (AAA) 228 361 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1163 Lele-ChrLele08 7275333 7278913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1163 189 431 Miscellaneous Gene Families AT3G47060 44.355 2.23e-55 195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1163 08 7275333 7278913 Lele08g1163 08 7275333 7278913 ECH
Lele05g1310 05 8149000 8152511 Lele08g1163 08 7275333 7278913 hybridization
Lele06g1171 06 7283388 7287791 Lele08g1163 08 7275333 7278913 hybridization