Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1171 ATGAGAAGTTCCATGGGATTGCAATTCACGGCAATTCATTTATTTGTGATGGGCTTCATGGCCCAAATAAATTGGTCTGGGGTTAAAAATTTGATTAAAGCAGTCATCCGCCCGTTCACTTGCGCTCAAAGCCAACTCGAGAAAGTTCTCTGTTTTTTTTTTATCGCTCCCTATATTCCCTATTTCCCTTCGTTGCTCTCACTTGTTCTTCAGGTCTGCGATTTACGAATTATGGGTCAGGGAACTCCGGGTGGTCTCAACCGTGGCGGTCTTCCGGGAGAGCGGAAACAGGATGGTAGCGGCAAGAAGGAGAAGAAGTTTGAGCCGGCGGCTCCGCCGGCACGAGTCGGTCGTAAGCAGCGAAAGCAGAAGGGTCCCGAGGCGGCGGCTCGTTTGCCTACAGTGACGCCCCTCACTAAGTGCAAGCTCCGGCTGTTAAAGCTTGAGCGAATCAAGGATTACTTGTTGATGGAAGAAGAATTTGTGGCTAATCAGGAGCGTCTCAAGCCTCAGGAGGAGAAGGCCGAGGAGGACAGATCCAAAGTCGATGACCTTAGGGGTTCGCCTATGAGCGTTGGTAACTTGGAGGAGCTTATAGACGAGAACCATGCCATTGTTTCATCTTCGGTCGGGCCGGAGTACTATGTGGGGATCTTGTCCTTTGTGGATAAGGATCAATTAGAGCCTGGATGTGCAATTTTGATGCACAATAAGGTGCTTTCCGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCCGTTATGAAGGTTGAGAAAGCTCCTTTGGAATCTTATGCTGACATTGGTGGTTTAGATGCTCAGATACAGGAAATTAAAGAAGCAGTTGAGCTTCCCCTGACACATCCCGAGCTATATGAAGACATTGGTATCAAGCCTCCTAAGGGGGTTATATTATATGGAGAACCTGGAACAGGGAAGACTTTGCTTGCAAAGGCTGTGGCAAACTCAACATCGGCAACATTTTTACGTGTTGTTGGTAGCGAATTGATACAAAAGTACTTGGGTGATGGTCCAAAGCTTGTGAGGGAACTTTTCAGAGTTGCTGATGATCTTTCCCCTTCTATTGTCTTCATTGATGAAATTGATGCTGTAGGTACAAAGAGGTATGATGCTCACTCTGGTGGGGAGCGGGAAATTCAAAGGACAATGTTGGAGTTGTTGAACCAGTTGGATGGTTTTGATTCAAGAGGAGATGTTAAAGTGATTCTAGCTACCAACAGAATTGAGAGTCTTGATCCCGCTTTGCTGCGACCTGGTCGAATAGACAGGAAGATAGAATTTCCTCTTCCTGATATCAAAACAAGGAGACGCATCTTCCAGATACATACATCGAGGATGACGTTAGCTGATGACGTCAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTCTCTGGTGCTGATATAAAGGCAATATGTACTGAAGCTGGCTTGCTCGCTTTAAGAGAACGCCGTATGAAGGTAACGCATGCAGACTTCAAGAAGGCAAAAGATAAGGTGATGTTTAAGAAGAAAGAAGGGGTGCCAGAAGGACTTTATATGTGA 1572 0.4587 MRSSMGLQFTAIHLFVMGFMAQINWSGVKNLIKAVIRPFTCAQSQLEKVLCFFFIAPYIPYFPSLLSLVLQVCDLRIMGQGTPGGLNRGGLPGERKQDGSGKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1171 523 SMART AAA_5 301 440 IPR003593 -
Lele06g1171 523 Gene3D - 443 517 - -
Lele06g1171 523 Gene3D - 190 257 IPR012340 -
Lele06g1171 523 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 158 510 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lele06g1171 523 MobiDBLite consensus disorder prediction 167 187 - -
Lele06g1171 523 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 120 514 - -
Lele06g1171 523 Gene3D - 258 438 IPR027417 -
Lele06g1171 523 MobiDBLite consensus disorder prediction 167 185 - -
Lele06g1171 523 FunFam 26S proteasome regulatory subunit 4 258 438 - -
Lele06g1171 523 ProSitePatterns AAA-protein family signature. 408 426 IPR003960 GO:0005524|GO:0016887
Lele06g1171 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 516 IPR027417 -
Lele06g1171 523 MobiDBLite consensus disorder prediction 84 131 - -
Lele06g1171 523 Pfam ATPase family associated with various cellular activities (AAA) 305 438 IPR003959 GO:0005524|GO:0016887
Lele06g1171 523 CDD AAA 271 438 - -
Lele06g1171 523 FunFam 26S proteasome regulatory subunit 4 443 519 - -
Lele06g1171 523 MobiDBLite consensus disorder prediction 95 112 - -
Lele06g1171 523 FunFam 26S protease regulatory subunit 4 156 257 - -
Lele06g1171 523 Pfam Proteasomal ATPase OB C-terminal domain 192 245 IPR032501 -
Lele06g1171 523 Pfam AAA+ lid domain 460 504 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1171 Lele-ChrLele06 7283388 7287791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1171 266 508 Miscellaneous Gene Families AT3G47060 44.355 1.39e-54 194
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1171 06 7283388 7287791 Lele06g1171 06 7283388 7287791 ECH
Lele06g1171 06 7283388 7287791 Lele07g1359 07 8200552 8204046 hybridization
Lele06g1171 06 7283388 7287791 Lele08g1163 08 7275333 7278913 hybridization