Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1065 ATGATCAACGCACCCAACGGCATGATATCCCCTTCTTCATCCGCTACCGCCCAATCCCCTGCTCTCAAGACTTATTTCAAGACGCCTGAAGGTCGCTACAAGCTGCAGTACGAGAAGTCACATCCTTCCGTCCTCCTTCACTATGCCCACGGCAAAACCGTCACTCAGGTAACTCTTGCACATCTCAAGGAGAAGCCAGCTCCTTCAACACCAACTGCCCCACCATCAAGTTTTAGTGCCAGCAGTGGGGTACGGTCAGCGGCTGCTAGATTGTTGGGAGGTGGCAATGGAAGCCGTGCACTTAGTTTTGTTGGAGGGAATGGTAGCAGCAAGAGTATTGGAGTAAACAGTAGGATTGGTTCTCTTGGTGCCTCAAGTTCAAGTAGTTTAATGGCTAATTCAAATTTTGATGGCAAAGGAACGTACTTGATCTTCAATGTTTGTGATGCAATTTTTGTTAGTGATTTGAATTCTCCAGACAAGGATCCCATAAAGTCCATTCACTTCAGTAATTCGCATCCTGTGTGCCACGCCTTTGATCAAGAAGCAAAGGATGGACATGATTTGCTTATTGGTTTGAGTACGGGTGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTCGGTAAAAAGCTTATAGGAGCTCATCATTACAACAAAGATGGTTCTGTCAATAACAGTCGTTGTACTAGTATTGCATGGATTCCTGGAGGTGATGGTGCTTTTGTTGTTGCTCATGCCGATGGGAATTTGTATGTATATGAAAAGAACAAAGACGGTGCTGGAGATTCTTCATTCCCAGTTATTAAAGATCAAGCACAATTTTCTGTTTCTCATGCACGTTACAGTAAGAGTAATCCAGTAGCCAGATGGCATATATGCCATGGTTCAATTAACAGTATTTCTTTCTCAAATGATGGTGCATACTTAGCAACTGTTGGAAGAGATGGCTATTTGCGAGTGTTTGATTTCTCTAAGGAACAACTTATATGTGGTGGTAAAAGTTATTATGGTGCTCTGTTATGTTGTGCTTGGAGCATGGATGCAAAATATATTTTGGCTGGAGGAGAAGATGATCTTGTGCAAGTTTGGAGCATGGAGGACCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGGTCAGTGGAGTGGCTTTCGATTCATATTGGAAATCACCAAATTCAAATGATAATACTGAAACTGTTATGTATCGGTTTGGATCTGTTGGTCAGGATACGCAATTGCTTCTTTGGGACCTGGAAATGGATGAGATTGTGGTACCATTGCGGCGAGCACCTGGTGGATCCCCCACTTACAGTGCTGGGAGCCAGTCATCTCACTGGGACAGTGTTGTCCCATTGGGTACATTGCAACCTGCTCCAAGCATGCGTGATGTCCCGAAAATCTCGCCTCTGGTTGCTCATCGTGCGCACACGGAACCCCTTTCAGGCTTGATATTTACCCAGGAATCTGTACTCACTGCTTGTCGGGAAGGACACATTAAAATCTGGACGAGACCTGGGATAGCTGAGAGCCAACCGAGCAGCTCTGAAACCTTGTTAGCTGCCAGCTTGAGGGAGAAACCACTACTTTCAAGCAAGGTTAGCAATACTAGTTACAAACAATGA 1638 0.4512 MINAPNGMISPSSSATAQSPALKTYFKTPEGRYKLQYEKSHPSVLLHYAHGKTVTQVTLAHLKEKPAPSTPTAPPSSFSASSGVRSAAARLLGGGNGSRALSFVGGNGSSKSIGVNSRIGSLGASSSSSLMANSNFDGKGTYLIFNVCDAIFVSDLNSPDKDPIKSIHFSNSHPVCHAFDQEAKDGHDLLIGLSTGDVYSVSLRQQLQDVGKKLIGAHHYNKDGSVNNSRCTSIAWIPGGDGAFVVAHADGNLYVYEKNKDGAGDSSFPVIKDQAQFSVSHARYSKSNPVARWHICHGSINSISFSNDGAYLATVGRDGYLRVFDFSKEQLICGGKSYYGALLCCAWSMDAKYILAGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWKSPNSNDNTETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRAPGGSPTYSAGSQSSHWDSVVPLGTLQPAPSMRDVPKISPLVAHRAHTEPLSGLIFTQESVLTACREGHIKIWTRPGIAESQPSSSETLLAASLREKPLLSSKVSNTSYKQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1065 545 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
Lele08g1065 545 Pfam WD domain, G-beta repeat 296 325 IPR001680 GO:0005515
Lele08g1065 545 Gene3D - 12 515 IPR015943 GO:0005515
Lele08g1065 545 SMART WD40_4 211 257 IPR001680 GO:0005515
Lele08g1065 545 SMART WD40_4 328 367 IPR001680 GO:0005515
Lele08g1065 545 SMART WD40_4 370 422 IPR001680 GO:0005515
Lele08g1065 545 SMART WD40_4 286 325 IPR001680 GO:0005515
Lele08g1065 545 SMART WD40_4 471 508 IPR001680 GO:0005515
Lele08g1065 545 PANTHER WD REPEAT PROTEIN 13 522 - -
Lele08g1065 545 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 334 IPR001680 GO:0005515
Lele08g1065 545 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Lele08g1065 545 SUPERFAMILY WD40 repeat-like 150 508 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1065 Lele-ChrLele08 6756386 6762046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1065 302 429 Miscellaneous Gene Families AT5G08390 21.875 2.15e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1065 08 6756386 6762046 Lele08g1065 08 6756386 6762046 ECH
Lele05g1215 05 7624870 7631172 Lele08g1065 08 6756386 6762046 hybridization
Lele06g1081 06 6740850 6750851 Lele08g1065 08 6756386 6762046 hybridization