Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1081 ATGATCAACGCACCCAACGGCATGATATCCCCGTCTTCATCCGCTACCGCCCAATCCCCTGCTCTCAAGACTTATTTCAAGACTCCTGAAGGTCGCTACAAGCTTCAGTACGAGAAGTCACATCCTTCCGTCCTCCTTCACTATGCCCACGGCAAAACCGTCACTCAGGTAACTCTTGCACATCTCAAGGAGAAGCCAGCTCCTTCAACACCAACTGCCCCACCATTAAGTTTTAGTGCCAGCAGTGGGGTACGGTCAGCGGCTGCTAGATTGTTGGGAGGTGGCAATGGAAGCCGTGCACTTAGTTTTGTTGGAGGGAATGGTAGCAGCAAGAGTATTGGAGTAAACAGTAGGATTGGTTCTCTTGGTGCCTCAAGTTCAAGTAGTTTAATGGCTAATTCAAATTTTGATGGCAAAGGAACGTACTTGATCTTCAATGTTTGTGATGCAATTTTTGTTAGTGATTTGAATTCTCAAGACAAGGATCCCATAAAGTCCATTCACTTCAGTAATTCGCATCCTGTGTGCCACGCCTTTGATCAGGAAGCAAAGGATGGACATGATTTGCTTATTGGTTTGAGTACGGGTGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTCGGTAAAAAGCTTATAGGAGCTCATCATTACAACAAAGATGGTTCTGTCAATAACAGTCGTTGTACTAGTGTTGCATGGATTCCTGGAGGTGATGGTGCTTTTGTTGTTGCTCATGCCGATGGGAATTTGTACGTATATGAAAAGAACAAAGACGGTGCTGGAGATTCTTCATTCCCAGTTATTAAAGATCAAGCACAATTTTCTGTTTCTCATACACGTTACAGTAAGAGTAATCCAGTAGCCAGATGGCATATATGCCAGGGTTCAATTAACAGTATTTCTTTCTCAAATGATGGTGCATACTTAGCAACTGTTGGAAGAGATGGCTATTTGCGAGTGTTTGATTTCTCTAAGGAACAACTTATATGTGGTGGTAAAAGTTATTATGGTGCTCTGTTATGTTGTGCTTGGAGCATGGATTCAAAATATATTTTGACTGGAGGAGAAGATGATCTTGTGCAAGTTTGGAGCATGGAGGACCGCAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGGTCAGTGGAGTGGCTTTCGATTCATATTGGAAATCACCAAATTCAAATGATAATACTGAAACTGTTATGTATCGGTTTGGATCCGTTGGTCAGGATACGCAGTTGCTTCTTTGGGACCTGGAAATGGATGAGATTGTAGTACCATTGCGGCGAGCACCTGGTGGATCCCCCACTTACAGTGCTGGGAGCCAGTCATCTCACTGGGACAGTGTTGTCCCATTGGGTACATTGCAACATGCTCCAAGCATGCGTGATGTTCCAAAAATCTCGCCTTTGGTTGCTCATCGTGCGCACACGGAACCCCTCTCAGGCTTGATATTTACCCAGGAATCTGTACTCACTGCTTGTCGGGAAGGACACATCAAAATCTGGACGAGACCTGGGATAGCTGATAGCCAACCGAGCAGCTCTGAAACCTTGTTAGCTGCCAGCTTGAGGGAGAAACCACTACTTCCAAGCAAGGATGAGGTCCGCCATGGATGGCAAAGAGAGGATGAGAGAATTGTCTATCACTTCCATCTTGCTCCAAACATGGGTCAGAGCAGGTTCGAGCCCGTACCTTCTTCCGAGGAGAGTCTAGTCAAGATTATCTCGTTTTTGACAAGCTACTCTGCCTCCCGTCTCGCTTGCTCTTTTCTGCCTATAAAGTCTGAAACTGTCATGGATAAAGATACAGGGGCTGTTCGATTCCAGACACTCGGCGAGTCCATAGCGAGGCGTATCCTTTTTCGCACACTCGTGCTCGCCTCAGCTGTTTCCATCCTTTCTTTGATCCGCGTCCTACCCACCTTCTATTTGGGAGCACTGTCCCCCGTCACCTACGATGACTGTATGGCCGATTCCGATTCCCATTCGGACTCTACAACCGTCACTCCCGGCTCCTATTTGTTCCAGGTTCGGATTCTGAACACCTTTTGGGGTTCATTCGAATCTATAAGTTGCAAACAGGACGTAAATTTGACTGTGAATGTAGTCACTGAGCTGATGGGTAAACAATTTTTGGACTGCGCTGCCAAAAGTCTCTGTATCGGAGAGGCATCACCAATGGCTGTCCCGGCAATGCAGCGGTTGGGATTCTCCAGTGTCATTGGTGTCCAAAAACCACACCCATTTTCTCTCAAACAGAAGAAAATTGTGTACGATCTCAATTACCAGGACTGTTCATTCGACTTCGTCTTCTCCAAGGACCTTGATAAGATTGCGGTCCCTGCTCTCCTTGTGCTCGAGGTTGAACGCATCCTTAAGCCCGGCGGAATCGGAGCCCTCCTTGTGGGCGCTGACTCTTCAAATCCAAATGACTCGATAAAGTCCATTAGTTCAGTGTCTTCATTACTGAGATCTTCCAGCATCCTGCACGTCAAATATATCAATGGGCTTAATCTGGTTGTTTTCAAGAAAAGATCCAAAACCAGTGTCTCCTACCAGAATGCCCTTCCACATGATTGTCCTAGTCTTACCCTTACCAAGCCTTTCATAAAGCTGCTGGAACCGCTTGTGGAGGAAAAACCTCTGGATTATGCGAAAGGGATGTCGTATTTACCCAAGTTTGTGGACTTTTCTGGTAGGAAACGGTTCGTGTACATTGATATCGGAGTAGGCGAGCTTCTGAACAAAGCCAACACCAGTGATCGGTTCATCACATCTTACCCCATGGACCAGAAAGCATTCAGCGTCTATTTCGTTCACTACAACACTTCAATCCTGTTATCCCACTTGAAACGACCTGGTATTACATTTGTTTATCATCCAGGATTGGATGGAAAGCTTACTACAGCCGAGCTTAGTAGTGAGAAAGACGTGGATCCATTTGTGGGAGAGGAAGAGTTTGATTTCCTTGCGTGGTTCAAAGCAACCGTGAAAAATGCGGATTTTGTGGTGCTGAAGATGAATGCTGGAGAGGTTGAGATGAAGCTTTTGTCAGATATATTTGAAAGCGGAGCTATATGCTACGTTGATGAGCTGTTCCTGGGCTGCCCAGACGTAGGAGATGGTCAAGGTGTGAAGACGAAGGAGAGCTGCATGAATATCCACAGGGGCCTCAGAAGCAATGGCGTTTATGTCCATCAATGGTGGGGAGATGTAAACGCTTGGGGATGA 3246 0.4621 MINAPNGMISPSSSATAQSPALKTYFKTPEGRYKLQYEKSHPSVLLHYAHGKTVTQVTLAHLKEKPAPSTPTAPPLSFSASSGVRSAAARLLGGGNGSRALSFVGGNGSSKSIGVNSRIGSLGASSSSSLMANSNFDGKGTYLIFNVCDAIFVSDLNSQDKDPIKSIHFSNSHPVCHAFDQEAKDGHDLLIGLSTGDVYSVSLRQQLQDVGKKLIGAHHYNKDGSVNNSRCTSVAWIPGGDGAFVVAHADGNLYVYEKNKDGAGDSSFPVIKDQAQFSVSHTRYSKSNPVARWHICQGSINSISFSNDGAYLATVGRDGYLRVFDFSKEQLICGGKSYYGALLCCAWSMDSKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWKSPNSNDNTETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRAPGGSPTYSAGSQSSHWDSVVPLGTLQHAPSMRDVPKISPLVAHRAHTEPLSGLIFTQESVLTACREGHIKIWTRPGIADSQPSSSETLLAASLREKPLLPSKDEVRHGWQREDERIVYHFHLAPNMGQSRFEPVPSSEESLVKIISFLTSYSASRLACSFLPIKSETVMDKDTGAVRFQTLGESIARRILFRTLVLASAVSILSLIRVLPTFYLGALSPVTYDDCMADSDSHSDSTTVTPGSYLFQVRILNTFWGSFESISCKQDVNLTVNVVTELMGKQFLDCAAKSLCIGEASPMAVPAMQRLGFSSVIGVQKPHPFSLKQKKIVYDLNYQDCSFDFVFSKDLDKIAVPALLVLEVERILKPGGIGALLVGADSSNPNDSIKSISSVSSLLRSSSILHVKYINGLNLVVFKKRSKTSVSYQNALPHDCPSLTLTKPFIKLLEPLVEEKPLDYAKGMSYLPKFVDFSGRKRFVYIDIGVGELLNKANTSDRFITSYPMDQKAFSVYFVHYNTSILLSHLKRPGITFVYHPGLDGKLTTAELSSEKDVDPFVGEEEFDFLAWFKATVKNADFVVLKMNAGEVEMKLLSDIFESGAICYVDELFLGCPDVGDGQGVKTKESCMNIHRGLRSNGVYVHQWWGDVNAWG 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1081 1081 SMART WD40_4 370 422 IPR001680 GO:0005515
Lele06g1081 1081 SMART WD40_4 328 367 IPR001680 GO:0005515
Lele06g1081 1081 SMART WD40_4 211 257 IPR001680 GO:0005515
Lele06g1081 1081 SMART WD40_4 286 325 IPR001680 GO:0005515
Lele06g1081 1081 SMART WD40_4 471 508 IPR001680 GO:0005515
Lele06g1081 1081 Gene3D - 12 514 IPR015943 GO:0005515
Lele06g1081 1081 SUPERFAMILY WD40 repeat-like 150 508 IPR036322 GO:0005515
Lele06g1081 1081 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 334 IPR001680 GO:0005515
Lele06g1081 1081 Pfam WD domain, G-beta repeat 297 325 IPR001680 GO:0005515
Lele06g1081 1081 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
Lele06g1081 1081 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Lele06g1081 1081 PANTHER WD REPEAT PROTEIN 13 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1081 Lele-ChrLele06 6740850 6750851 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1081 06 6740850 6750851 Lele06g1081 06 6740850 6750851 ECH
Lele06g1081 06 6740850 6750851 Lele07g1261 07 7645155 7650881 hybridization
Lele06g1081 06 6740850 6750851 Lele08g1065 08 6756386 6762046 hybridization