Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0917 ATGGCCGTGAAGAGGTTCCTGAAACCCGTTGCTAAACCATCACCCTTGTCGTTGCCGCCGCCGCCCCTTTCTCCGATCCCCAACCCTCCGCTTCCGGCCCCTCCTGATACTTCTCTCTCCCCGCTTCCTACTCTTACTCTTTCTCCCAACTCCCACTACCATCACCTCCTTCACTTCGTTAAGACCCATCTTACTCCTCCTTTCACACCAGACGGCCTTCTCCACTTCCTCAGATCCAAGCTCCATCACCATCCTAGCTTCACCATCTATGACTTTCATATCTTCAATTGGGCCTCCACCATCGACTCCTATCGCCACAACCACTCTACTTTCGAATGGATGACTCGTACTCTCGCTATTACCAACCGCCTGGTCGAACTACGAGCTCTTCTCCAATTCATGGCTTCCAATCCTTGCCCCTGCTCTGACGGTATTTTCTCTTGCCCTCGAACCGAATCCATATTCCAGTTTTCGATTAACGCTTTTTGTAAAGCCCGGAAACTGGACGATGCTGTTTTCGCTTTTGAGTGTATGCGGAGATTGATTGATGGGAAACCTAATGTGGTGATTTGTAACTGCTTGATTCATGGGTTTGTAAAATGCGGAAGGCACCATAAAGCGTTGGAATTTTATGATAAAATGATAAGAGATAGAGTCAAGCCTGATGTGTTTACCTTTAATATTTTGATCAGTAGTTATTGTCGGAATTCACAGTTTGTATTGGCTTTGGATTTGTTTAAGGAGATGAGGGAAAAGGGATGCAACCCCAATGTGGTTACTTTTAATACTTTGATTAAGGGGCTCTTTAGGGAGCGGAAGATTGAAGAAGGGATTGAGATGGCTTACGAGATGATTGAATTGGGGTGTCAGCTCTCAAGCGTGACTTGTGAGATTTTAGTTGATGGACTTTGTAGGGAAGGTCAGGTTTTGCGAGCATGTGAGGTATTAGCAGACTTGTCCAGCAAGAGACTTTTGCCCAATGGATACGATTATTTTGATTTGGTGGAAACTCTATGTGGGAACGGTAATGTTGCTATGGCATTGAAGCTTATTTATGAGCTATGGAACCAAGGAAATGCCCCAAGCTTGATCGCTTGCACTACATTAATTGACGGCTTAAGGAGCTTGGGGAAGACCGAAGAAGCATTCAGATTGTCAGAAAAGATGCTTAAAGAAAATATAGTTCTGGATATCGTGACTTTCAATTCTGTTCTTCAGGATACTTGTCATATGCGAAGAACAACTGATGCAAATAAGTTGAGATTGCTGGCTTCAATAAAGGGTTTGAAACCAGATGGCATGACCTATAGAATTTTGGTTTCTGGTTATGCACGAGAGGGCGGTCAAAAGGAGGGAGAGTCAGTGTTAAATGAAATGTTGGATAGGGGATTCATATCTGATCTTGCTACATATAATAAATTGATGAATGGTTTCTCTAATTGA 1443 0.438 MAVKRFLKPVAKPSPLSLPPPPLSPIPNPPLPAPPDTSLSPLPTLTLSPNSHYHHLLHFVKTHLTPPFTPDGLLHFLRSKLHHHPSFTIYDFHIFNWASTIDSYRHNHSTFEWMTRTLAITNRLVELRALLQFMASNPCPCSDGIFSCPRTESIFQFSINAFCKARKLDDAVFAFECMRRLIDGKPNVVICNCLIHGFVKCGRHHKALEFYDKMIRDRVKPDVFTFNILISSYCRNSQFVLALDLFKEMREKGCNPNVVTFNTLIKGLFRERKIEEGIEMAYEMIELGCQLSSVTCEILVDGLCREGQVLRACEVLADLSSKRLLPNGYDYFDLVETLCGNGNVAMALKLIYELWNQGNAPSLIACTTLIDGLRSLGKTEEAFRLSEKMLKENIVLDIVTFNSVLQDTCHMRRTTDANKLRLLASIKGLKPDGMTYRILVSGYAREGGQKEGESVLNEMLDRGFISDLATYNKLMNGFSN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0917 480 Pfam Pentatricopeptide repeat domain 426 478 IPR002885 -
Lele08g0917 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Lele08g0917 480 SUPERFAMILY HCP-like 173 291 - -
Lele08g0917 480 Gene3D Tetratricopeptide repeat domain 210 327 IPR011990 GO:0005515
Lele08g0917 480 Gene3D Tetratricopeptide repeat domain 333 480 IPR011990 GO:0005515
Lele08g0917 480 MobiDBLite consensus disorder prediction 13 39 - -
Lele08g0917 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Lele08g0917 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Lele08g0917 480 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Lele08g0917 480 TIGRFAM PPR: pentatricopeptide repeat domain 365 397 IPR002885 -
Lele08g0917 480 TIGRFAM PPR: pentatricopeptide repeat domain 189 223 IPR002885 -
Lele08g0917 480 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Lele08g0917 480 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Lele08g0917 480 Gene3D Tetratricopeptide repeat domain 86 209 IPR011990 GO:0005515
Lele08g0917 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Lele08g0917 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Lele08g0917 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 76 373 - -
Lele08g0917 480 MobiDBLite consensus disorder prediction 1 41 - -
Lele08g0917 480 Pfam PPR repeat 159 180 IPR002885 -
Lele08g0917 480 Pfam PPR repeat 294 321 IPR002885 -
Lele08g0917 480 Pfam PPR repeat 189 218 IPR002885 -
Lele08g0917 480 Pfam PPR repeat family 221 269 IPR002885 -
Lele08g0917 480 Pfam PPR repeat family 361 410 IPR002885 -
Lele08g0917 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0917 Lele-ChrLele08 5784496 5785938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0917 159 478 Glycosyltransferase AT1G05670 29.595 2.45e-42 158
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0929 06 5750525 5751961 Lele08g0917 08 5784496 5785938 hybridization