Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0929 ATGGCCGTGAAGAGGTTCCTGAAACCCGCTAAACCATCACCCTCGTCGCCGCCGCAGCCCCTTTCTCCGATCCCCAACCCCCCGCTTCCGGCCCCTCCTGATACTTCTCTCTCCCCGCTTCCTACTCTTACTCTTTCTCCCAACTCCAACTACCATCGCCTCCTTCACTTCGTTAAGACCCATCTTACTCCTCCTTTCACACCAGACGGCCTTCTCCACTTCCTCAGGTCCAAGCTCCATCACCATCCTAGCTTCACCATCTATGATTTTCATATCTTCAATTGGGCCTCCACCATCGACTCCTATCGCCACAACCACTCTACTTTCGAATGGATGACTCGCACTCTCGCTATTACCAACCGCCTGGTCGAACTACGAGCTCTTCTCCAATTAATGGCTTCCAATCCTTGCCCCTGCTCTGACGGTATTTTCTCTTGCCCTCGAACCGAATCCATATTCCAGTTTTCGATTAACGCTTTTTGTAAAGCCCGGAAACTGGACGATGCTGTTTTCGCTTTTGAGTGTATGCGGAGATTGATTGATGGGAAACCTAATGTGGTGATTTGTAACTGCTTGATTCATGGGTTTGTAAAATGCGGAAGGCACGATAAAGCGTTGAAATTTTATGATAAAATGATAAGAGATAGAGTCAAGCCTGATGTGTTTACCTTTAATATTTTGATCAGTAGTTATTGTCGGAATTCACAGTTTGTATTGGCTTTGGATTTGTTTAAGGAGATGAGGGAAAAGGGATGCAACCCCAATGTGGTTACTTTTAATACTTTGATTAAGGGGCTCTTTAGGGAGCGGAAGATTGAAGAAGGGATTGAGATGGCTTACGAGATGATTGAATTGGGGTGTCAGCTCTCAAGCGTGACTTGTGAGATTTTAGTTGATGGACTTTGTAGGGAAGGTCAGGTTTTGCGAGCATGTGAGATATTAGCAGACTTGTCCAGCAAGAGACTTTTGCCCAATGGATACGATTATTTTGATTTGGTGGAAACTCTATGTGGGAAAGGTAATGCTGCTATGGCATTGAAGCTTATTTATGAGCTATGGAACCAAGGAGATGCCCCAAGCTTGATCGCTTGCACTACATTAATTGACGGCTTAAGGAGCTTGGGGAAGACTGAAGAAGCATTCAGATTGTCAGAAAATATGCTTAAAGAAAATATAGTTCTGGATATCGTGACTTTCAATTCTGTTCTTCAGGATACTTGTAATATGCGAAGGACAACAGATGCAAATAAGTTGAGATTGCTGGCTTCAAGAAAGGGCTTGAAACCAGATGGCATGACCTATAGAATTTTGGTTTCTGGGTATGCACGAGAGGGCAGTCAAAAGGAGGGAGAGTCAGTGTTAAATGAAATGTTGGATAGGGGATTCATATCTGATCTTGCTACATATAATAAATTGATTAATGGTTTCTCTAATTGA 1437 0.4377 MAVKRFLKPAKPSPSSPPQPLSPIPNPPLPAPPDTSLSPLPTLTLSPNSNYHRLLHFVKTHLTPPFTPDGLLHFLRSKLHHHPSFTIYDFHIFNWASTIDSYRHNHSTFEWMTRTLAITNRLVELRALLQLMASNPCPCSDGIFSCPRTESIFQFSINAFCKARKLDDAVFAFECMRRLIDGKPNVVICNCLIHGFVKCGRHDKALKFYDKMIRDRVKPDVFTFNILISSYCRNSQFVLALDLFKEMREKGCNPNVVTFNTLIKGLFRERKIEEGIEMAYEMIELGCQLSSVTCEILVDGLCREGQVLRACEILADLSSKRLLPNGYDYFDLVETLCGKGNAAMALKLIYELWNQGDAPSLIACTTLIDGLRSLGKTEEAFRLSENMLKENIVLDIVTFNSVLQDTCNMRRTTDANKLRLLASRKGLKPDGMTYRILVSGYAREGSQKEGESVLNEMLDRGFISDLATYNKLINGFSN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0929 478 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 74 476 - -
Lele06g0929 478 TIGRFAM PPR: pentatricopeptide repeat domain 292 325 IPR002885 -
Lele06g0929 478 TIGRFAM PPR: pentatricopeptide repeat domain 187 221 IPR002885 -
Lele06g0929 478 TIGRFAM PPR: pentatricopeptide repeat domain 363 395 IPR002885 -
Lele06g0929 478 TIGRFAM PPR: pentatricopeptide repeat domain 222 256 IPR002885 -
Lele06g0929 478 TIGRFAM PPR: pentatricopeptide repeat domain 257 290 IPR002885 -
Lele06g0929 478 TIGRFAM PPR: pentatricopeptide repeat domain 433 464 IPR002885 -
Lele06g0929 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Lele06g0929 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Lele06g0929 478 MobiDBLite consensus disorder prediction 1 42 - -
Lele06g0929 478 Gene3D Tetratricopeptide repeat domain 89 237 IPR011990 GO:0005515
Lele06g0929 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Lele06g0929 478 Pfam PPR repeat 425 457 IPR002885 -
Lele06g0929 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Lele06g0929 478 SUPERFAMILY HCP-like 172 288 - -
Lele06g0929 478 Pfam PPR repeat family 219 267 IPR002885 -
Lele06g0929 478 Pfam PPR repeat family 359 408 IPR002885 -
Lele06g0929 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Lele06g0929 478 Gene3D Tetratricopeptide repeat domain 331 478 IPR011990 GO:0005515
Lele06g0929 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Lele06g0929 478 MobiDBLite consensus disorder prediction 11 37 - -
Lele06g0929 478 Gene3D Tetratricopeptide repeat domain 246 320 IPR011990 GO:0005515
Lele06g0929 478 Pfam PPR repeat 292 319 IPR002885 -
Lele06g0929 478 Pfam PPR repeat 187 216 IPR002885 -
Lele06g0929 478 Pfam PPR repeat 157 178 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0929 Lele-ChrLele06 5750525 5751961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0929 157 476 Glycosyltransferase AT1G05670 30.218 1.79e-43 161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0929 06 5750525 5751961 Lele08g0917 08 5784496 5785938 hybridization