Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0892 ATGGTAGGAGCGCCTGCACGTGAGGGAGGATGGAAGAAAGGGATAGCCATAATGGACTTTATTTTGAGGTTGGGCGCCATAGCTTCTGCTCTGGGTGCTGCAGCCACCATGGCAACTGCTGATCAGATTCTCCCTTTCTTCACTCAGTTCTTCCAGTTTGAAGCCGGCTACGACGACTTCCCCACTTTCCAGTTTTTCGTCATCGCAATGGCATTCGTGGGAGGCTACCTGGTGTTTCTGACGCTGGCGGCTGCCGGTGGGGCTGCATCGGCCGCCATAGTATACTTGGCCCACAATGGGAGTGACGACGCTAATTGGCTGGCCATATGCAATCAGTTCACTGATTTTTGCCAGGCTACCAGTGGAGCTGTGGTGGCGTCCTTCGTTGCCGTGGTTTTCCTTGTGCTGTTGGTTATCATATCGGGGAGGACCGAAAATCTACAAGGGGGCAACTGGGCGAGTGCGACTCAGTTTGCTATTGAGACGGTAGGGGTCTTTTTCTTCTCCTCAAGTCCAAGTCCAAGTCCTCGCTCCGTCTTCTTTCACTGCTACTGCGTTCGCGGCTTTATCGTCATCTTTCTCAGTGTCAAGGGCTCAGGGTTTTTGCATCATCGAATGAAAATGTCTCAAATCAAGAAATTGACGCCGAATCTTGACCAGCAGAGCACGAAGATGCTCAATCTCACTGTTCTTCAGAGGAGAGATCCGTGCATCGAAGAGATTTTGTTTACTGCCTCTCATGTTTCCTTCTACTCGTTCAACATCGAAAGCAATCAATGGAGTCGTAAGGATGTTGAAGGATCTCTCTTTGTCGTGAAGAGGAATGCAGAACCTCAGTTTCAATTCATAGTAATGAACCGCCTCAATGCAGATAACCTAGTGGAAAATCTATTGGATTTTGAGTATGAACTGAAAAAGCCATACTTATTATATAGGAATGCTGCCCAAGAAGTTAATGGTATATGGTTTTACAATTCAGATGAAAGTGAAGAAGTCGCAAATCTCTTTAATAGCATACTTGATGCATACTCGAAGGCAGCTCCAAAGACAAAATTGCCTTATAGCAAAAGTGAATTTGAGGAACTTGAACCAGGAGCAATTTTAGCAGAAAAGCATCTGAAGTCGTCTTTAGCCACCCCATCCACAATTGGTGCACTTGAAGATCCTGCATTTGTAGACTGCCTCAATACAGATAATGTCACTGGTACCTATACTTCAAATGTGGAAAGTTTAAGACAGCCCTACCATTCTGGAAACGTTGCTTCTGTTGCTCCCAGTGGTGTGTTTTCTGCGGCCCCATCTATGAATGTACCGTCTGCTTCTCATTCAGCTTCATTGCTACAAGCCTTCCTACACGACTCTTCTGATACAAGCAACAGGGGCAGTCAAAACGCCAATCTTTTGAAGCCTTCTACATTTTTAACATCCCCTCTCTCTCCATCTGCACCTTCTGCAGCTTTTCTTAATTTCCTGAATCAGCCACAGCCACAGCCACAACCACGTCAACATGGCACGCCGTTCCTTCAACCATTTCCACCGCCAAGTCCACCTCCATCTCTTAACCCAACTAATACCTCCACCCCGAACAAGCCTGTTATCAGAAGAGAGAAAGTGCGTGATGCACTTTTATCACTTGTCCAGGATGATCAATTCATTGACATGGTGTTTCAGACATTGCTAAAGCCGCACCATTGA 1695 0.4649 MVGAPAREGGWKKGIAIMDFILRLGAIASALGAAATMATADQILPFFTQFFQFEAGYDDFPTFQFFVIAMAFVGGYLVFLTLAAAGGAASAAIVYLAHNGSDDANWLAICNQFTDFCQATSGAVVASFVAVVFLVLLVIISGRTENLQGGNWASATQFAIETVGVFFFSSSPSPSPRSVFFHCYCVRGFIVIFLSVKGSGFLHHRMKMSQIKKLTPNLDQQSTKMLNLTVLQRRDPCIEEILFTASHVSFYSFNIESNQWSRKDVEGSLFVVKRNAEPQFQFIVMNRLNADNLVENLLDFEYELKKPYLLYRNAAQEVNGIWFYNSDESEEVANLFNSILDAYSKAAPKTKLPYSKSEFEELEPGAILAEKHLKSSLATPSTIGALEDPAFVDCLNTDNVTGTYTSNVESLRQPYHSGNVASVAPSGVFSAAPSMNVPSASHSASLLQAFLHDSSDTSNRGSQNANLLKPSTFLTSPLSPSAPSAAFLNFLNQPQPQPQPRQHGTPFLQPFPPPSPPPSLNPTNTSTPNKPVIRREKVRDALLSLVQDDQFIDMVFQTLLKPHH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0892 564 MobiDBLite consensus disorder prediction 490 533 - -
Lele08g0892 564 MobiDBLite consensus disorder prediction 499 524 - -
Lele08g0892 564 Gene3D - 214 343 IPR011993 -
Lele08g0892 564 CDD Dcp1 221 340 - -
Lele08g0892 564 FunFam mRNA-decapping enzyme-like protein 216 342 - -
Lele08g0892 564 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 78 141 IPR006459 -
Lele08g0892 564 PANTHER TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1 217 563 IPR010334 GO:0000290|GO:0008047|GO:0043085
Lele08g0892 564 SUPERFAMILY PH domain-like 226 345 - -
Lele08g0892 564 Pfam Casparian strip membrane protein domain 78 133 IPR006702 -
Lele08g0892 564 Pfam Dcp1-like decapping family 224 337 IPR010334 GO:0000290|GO:0008047|GO:0043085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0892 Lele-ChrLele08 5634645 5643472 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0892 08 5634645 5643472 Lele08g0892 08 5634645 5643472 ECH
Lele05g1044 05 6490702 6496461 Lele08g0892 08 5634645 5643472 hybridization
Lele06g0902 06 5609821 5619041 Lele08g0892 08 5634645 5643472 hybridization