Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0538 ATGGCTGATGCTGGGATCAAGTACATCCCCAGCAACACATTTTCCTTCTATGATCAGGTGCTCGATGCTACTGCCCTTCTTGGTGCTGTTCCACCCAGATACGGATGGACTGGTGGAGAGATTGGTTTCGATACCTACTTCTCCATGGCCAGAGGTAATGCGTCAGTACCTGCAATGGAGATGACCAAATGGTTCGACACCAACTATCACTTTATTGTCCCTGAATTGGGACCTGAGGTGAACTTCTCTTACGCTTCTCACAAAGCTGTGGATGAGTACAAGGAAGCCAAAGCTCTTGGAGTAGATACAGTTCCAGTCCTGATTGGTCCTGTCTCGTACTTGTTGCTCTCCAAACCTGCGAAGGGTGTTGAGAAAACCTTTTCTCTCCTCTCCCTCCTTCCAAAAATCCTTGCAGTTTACAAGGAAGTTATAGCTGATCTTAAGGCAGCTGGCGCTTCATGGATCCAGTTTGATGAACCAACCCTTGTTTTAGATCTTGATTCTCACAAGCTCCAAGCATTTACTGAAGCATACTCAGAGCTTGAATCTTCTTTATCTGGATTGAATGTCCTGATTGAGACCTACTTTGCTGATATTCCTGGTAGTGCTTACAAGACCATCACTTCTCTCAAGGGTGTCACAGCTTATGGATTTGATCTTGTCCGTGGAACTCAGACCCTTAATTTGATCAAGGCTGGGTTTCCCAGCGGAAAGTACCTCTTTGCCGGAGTGGTTGATGGAAGGAACATCTGGGCTAATGATCTTGCTGCATGTCTAAGCTTACTTCATGATCTTGAGGGCATTGTCGGCAAAGACAAACTTGTTGTCTCCACCTCCTGCTCGCTTCTTCACACTGCTGTTGATCTTGTAAATGAGACCAAACTTGATGATGAAATCAAGTCATGGCTGGCTTTTGCTGCCCAGAAAATTGTTGAAGTTAATGCATTGTCCAAGGCATTGTCTGGTGCAAAAGACGAGGCCTTCTTCTCAGCTAATGCCGCATCTATGGCTTCAAGGAGGTCCTCTCCAAGAGTGACCAATGAGGCTGTTCAGAAGGCTGTTGCTGCATTGAAGGGTTCTGACCACCGCCGTGCCACTAATGTCAGCGCCAGACTGGATGCTCAACAAAAGAAGCTTAACCTTCCAATCCTCCCAACCACCACTATTGGATCCTTCCCTCAGACTGTAGAGCTGAGGAGGGTACGCCGTGAATTCAAAGCTAACAAGATCACCGAGGAAGAGTATGTTAATTTCATTAGAGAAGAAATCCGCAAAGTTGTTGAACTACAAGAAGAGCTTGATATTGATGTCCTTGTACATGGGGAGCCAGAGAGAAACGATATGGTTGAGTACTTTGGTGAGCAGATGTCTGGCATTGCCTTCACCGTTAATGGGTGGGTGCAATCTTATGGATCTCGTTGCGTGAAGCCACCAATCATCTACGGTGATGTGAGCCGCCCAAAGGCTATGACTGTGTTCTGGTCATCTATGGCTCAGAGCATGACCAAGCGCCCAATGAAGGGAATGCTTACCGGTCCTGTGACCATTCTGAACTGGTCCTTCGTTAGAGTCGACCAGCCTAGATCTGAGACTACCTACCAGATTGCCTTGGCTATTAAGGAGGAAGTAGAAGATCTTGAGAAGGCCGGCATCAACGTGATCCAAATTGACGAAGCTGCTTTGAGAGAGGGATTGCCTCTGAGGAAGTCAGAGCAAGCTCACTACTTGGACTGGGCTGTCCACGCCTTCAGGATCACCAACGTTGGTGTGAAGGGCACCACTCAGATCCACACCCACATGTGCTATTCCAACTTCAACGACATCATCCACTCAATCATTGACATGGATGCCGATGTGATCACCATTGAGAACTCTCGATCAGATGAGAAGCTTCTCTCAGTGTTCCGTGAAGGAGTGAAGTACGGTGCCGGAATTGGCCCCGGCGTGTATGACATTCACTCTCCCAGGATCCCACCAACAGAGGAAATTGCCGATAGGATCAACAAGATGCTAGCGGTGCTGGAGAAGAACATCTTGTGGGTCAACCCTGATTGTGGGCTCAAGACTCGCAAGTACACTGAGGTGAAGCCAGCCCTCACCAACATGGTTGCTGCCGCCAAACTCATCCGCAATGAGCTCGCCTCTGCTAAGTGA 2154 0.4805 MADAGIKYIPSNTFSFYDQVLDATALLGAVPPRYGWTGGEIGFDTYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPEVNFSYASHKAVDEYKEAKALGVDTVPVLIGPVSYLLLSKPAKGVEKTFSLLSLLPKILAVYKEVIADLKAAGASWIQFDEPTLVLDLDSHKLQAFTEAYSELESSLSGLNVLIETYFADIPGSAYKTITSLKGVTAYGFDLVRGTQTLNLIKAGFPSGKYLFAGVVDGRNIWANDLAACLSLLHDLEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDDEIKSWLAFAAQKIVEVNALSKALSGAKDEAFFSANAASMASRRSSPRVTNEAVQKAVAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREFKANKITEEEYVNFIREEIRKVVELQEELDIDVLVHGEPERNDMVEYFGEQMSGIAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRVDQPRSETTYQIALAIKEEVEDLEKAGINVIQIDEAALREGLPLRKSEQAHYLDWAVHAFRITNVGVKGTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLEKNILWVNPDCGLKTRKYTEVKPALTNMVAAAKLIRNELASAK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0538 717 Gene3D - 342 710 IPR038071 -
Lele08g0538 717 CDD CIMS_N_terminal_like 2 319 - -
Lele08g0538 717 Pfam Cobalamin-independent synthase, N-terminal domain 2 267 IPR013215 GO:0003871|GO:0008270|GO:0008652
Lele08g0538 717 SUPERFAMILY UROD/MetE-like 2 347 IPR038071 -
Lele08g0538 717 Gene3D - 2 477 IPR038071 -
Lele08g0538 717 Pfam Cobalamin-independent synthase, Catalytic domain 384 707 IPR002629 GO:0003871|GO:0008270|GO:0009086
Lele08g0538 717 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 346 - -
Lele08g0538 717 PIRSF Met_synth_MetE 1 717 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lele08g0538 717 SUPERFAMILY UROD/MetE-like 349 711 IPR038071 -
Lele08g0538 717 CDD CIMS_C_terminal_like 385 708 IPR002629 GO:0003871|GO:0008270|GO:0009086
Lele08g0538 717 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 1 717 - -
Lele08g0538 717 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 347 710 - -
Lele08g0538 717 TIGRFAM met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 2 711 IPR006276 GO:0003871|GO:0008270|GO:0009086
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0538 Lele-ChrLele08 3256135 3259880 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0538 08 3256135 3259880 Lele08g0538 08 3256135 3259880 ECH
Lele05g0700 05 4128255 4134632 Lele08g0538 08 3256135 3259880 hybridization
Lele06g0533 06 3210194 3213904 Lele08g0538 08 3256135 3259880 hybridization