LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g0510	ATGGCCCTGGCATCGCAAGGAAGGGGTTCGGACAATACTGAATTGAGCCAGGAAATTCAAACTCGATCGCTTCAAGAACGAGTTGCGATTGTTACTGGTTCGTCTCGCGGAATCGGCCGAGATATCGCGCTTCATCTATCTTCACTCGGTTCAAGAGTCGTCGTCAATTACACCTCCAACTCCGCCCCTGCGGAATCAACTGTTGCTCAGGTTAATTCCTCTTCCCCCGGTGGCAGTAATCCACGAGCCATTGTCGTCAGGGCTGATGTTTCCGACCCGACTCAGGTGAAGTCTCTCTTCGATGAGGCTGAGAAGGCCTTCAACTCACCGGTTAATATCCTGGTTAATTCTGCTGCAGTTATTGACAGCAAATACTCTTCCGTACCCAACACTTCCTTGGAGGACTTCGATTATATTTTCAGGGTGAACGCAAGAGGGGCGTTTCTGTGTTGTAAGGAGGCAGCAAACCGCTTGAAACGTGGGGGAGGAGGTAGGGTTATAATGTTATCTACATCGCTAGTGGGTTCAACGATGCCAGGTTATGGGGCATACGCATCATCCAAAGCAGCGGTAGAGACAATGGTGAAGATTTTAGCAAAAGAGCTGAAGGGGACGGGAATCACGGCCAACTGTATTGCGCCGGGGGCAGTTGCAACAGACATGTTTTTTACTGGTAAGAGTGAGAAACAAGTGAAGGCGGCTATTGAAATGTGTCCTCTAGGTAGGCTTGGGGAGACGAAGGATATAGCCCCTGTGGTGGGTTTCTTGGCCGGTGACGCCGGTGAGTGGATCAATGGTCAGGTGATTCGTGTTAACGGTGGCTATTTAGAGCTGATGAAGCCATTGACATATCTTTATTCCCTTGGTTTACAGCCTCTCAGTGACCAGCATAGTCTGGAAAAGTTAGAAAAGAAATGTACAAATTTGTCAATTGCAAGGTCAAGGAGAGGAAAGGGGATGGCACAGTTTACAACTCACGGTTGCTTAAAGACGCTCTTTAATGGCGAGGGATTCTCATTTCCTTCGGAGCAGAAGGACCCGTTTCACTTCAAGTTCAGATCAATTCAGAGCCGCGAGCTAAAGGTTAGGTGGATAGGTTCTTTTTCATCATACCCGAGTTGTAAAAGGAACCGTTGCAATGCGGAGGCACTCCCCAGTTCCACTTTTAGCAATGGCAGTGTTCGTGATGATGATTATCCTGATCATGATGATTATGATTTTGATAACGATAGCGTAGCTTCTTTCAGAGGCCTGGCGTTGGATGTATCGTACAGTAATTTATTCACCATAGACTTTATCAATGATCTTTTTCCCCATAAGCCAGTTAATGTTGTAAGCTGGAAACGTGCTATATATGTTTGGAGTTTATGGAGAAGGTCAGCTCTTTCAGCACAATGCCACGACGCTTTCTTTGAGTTAATTATTGTAAAACATTTTATTATGTTAATTGCTGTCCATTGCTTTAAAACAGACATGAGCTTATGTAAAGCTAAGGAAACCCAGGCTGATGTACTTGAGTATTATTTCTATATACCAGCTGTCTTAAGGGTTGTCAAAAGAAGAGTTGTCAAGAGCAATCTTAATAGGAAGAATATACTATATCGGGACTTTTACACCTGCCAGTATTGCTCTTCACGTGAGAATTTGACCATTGACCATGTTGTGCCCGCTTCACTGGGTGGAGAATGGAAATGGGAAAATCTATGTTTTGCCGGTTGCCAGTGTTCATACATGTATACTGCTTATCATTTTTCTACGCTTGGAGCCTTCGGGGCGTTGTTACTTTGGTGTGCTTTTCTTAGCGCAATTGGGCAGAATACCTATTTTGGGCAAGATCCTCAAATCATTAATCATGATACTCGGCTGATTCCATGTAATGATTGA	1884	0.449	MALASQGRGSDNTELSQEIQTRSLQERVAIVTGSSRGIGRDIALHLSSLGSRVVVNYTSNSAPAESTVAQVNSSSPGGSNPRAIVVRADVSDPTQVKSLFDEAEKAFNSPVNILVNSAAVIDSKYSSVPNTSLEDFDYIFRVNARGAFLCCKEAANRLKRGGGGRVIMLSTSLVGSTMPGYGAYASSKAAVETMVKILAKELKGTGITANCIAPGAVATDMFFTGKSEKQVKAAIEMCPLGRLGETKDIAPVVGFLAGDAGEWINGQVIRVNGGYLELMKPLTYLYSLGLQPLSDQHSLEKLEKKCTNLSIARSRRGKGMAQFTTHGCLKTLFNGEGFSFPSEQKDPFHFKFRSIQSRELKVRWIGSFSSYPSCKRNRCNAEALPSSTFSNGSVRDDDYPDHDDYDFDNDSVASFRGLALDVSYSNLFTIDFINDLFPHKPVNVVSWKRAIYVWSLWRRSALSAQCHDAFFELIIVKHFIMLIAVHCFKTDMSLCKAKETQADVLEYYFYIPAVLRVVKRRVVKSNLNRKNILYRDFYTCQYCSSRENLTIDHVVPASLGGEWKWENLCFAGCQCSYMYTAYHFSTLGAFGALLLWCAFLSAIGQNTYFGQDPQIINHDTRLIPCND	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g0510	627	PRINTS	Glucose/ribitol dehydrogenase family signature	205	222	IPR002347	-
	Lele08g0510	627	PRINTS	Glucose/ribitol dehydrogenase family signature	28	45	IPR002347	-
	Lele08g0510	627	PRINTS	Glucose/ribitol dehydrogenase family signature	109	120	IPR002347	-
	Lele08g0510	627	PRINTS	Glucose/ribitol dehydrogenase family signature	184	203	IPR002347	-
	Lele08g0510	627	PRINTS	Glucose/ribitol dehydrogenase family signature	239	259	IPR002347	-
	Lele08g0510	627	PRINTS	Glucose/ribitol dehydrogenase family signature	158	174	IPR002347	-
	Lele08g0510	627	Pfam	Enoyl-(Acyl carrier protein) reductase	33	275	-	-
	Lele08g0510	627	CDD	THN_reductase-like_SDR_c	24	275	-	-
	Lele08g0510	627	CDD	HNHc	529	568	IPR003615	-
	Lele08g0510	627	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	26	276	IPR036291	-
	Lele08g0510	627	SMART	HNH_5	527	577	IPR003615	-
	Lele08g0510	627	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele08g0510	627	FunFam	Short-chain dehydrogenase reductase	15	280	-	-
	Lele08g0510	627	Gene3D	-	515	583	-	-
	Lele08g0510	627	Pfam	HNH endonuclease	540	569	IPR029471	-
	Lele08g0510	627	Gene3D	-	12	283	-	-
	Lele08g0510	627	MobiDBLite	consensus disorder prediction	6	20	-	-
	Lele08g0510	627	PANTHER	NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED	17	274	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g0510	Lele-ChrLele08	3103849	3110940	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g0510	13	274	Acyl Lipid Metabolism Gene Families	AT1G24360	30.943	1.41e-26	108

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele08g0510	08	3103849	3110940	Lele08g0510	08	3103849	3110940	ECH
	Lele05g0677	05	3994683	4001803	Lele08g0510	08	3103849	3110940	hybridization
	Lele06g0502	06	3053934	3055342	Lele08g0510	08	3103849	3110940	hybridization