Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0118 ATGGCTAACCCAACACAACCAGATGTTGGGTCTTCCGTCACTGTTTCCCCTTCTAATCCAGACAGACAGAATCCTTACCATGAGCAAAGTCCAATTGTCCCTCCCCATCCAAGTTTTACTGCAACACCTAGATTTCCTCCACCCAAATTACAACAAAATCAAGCATCTTCACCTTCCATGAGAACCCCACCCGTTTTATCCCCGGCCAACGGGGTTAAAACAGGTAGTCCTGTTCCTCATTTGAGTACTCCCCCTGGACCTCCTGCTTTTACTAAACCTGTACGTCCAGCTGCTGTTCCTTTTCGCACGTCACCTGCATCACCTCAGCCAGTTGCTGTATCTTCTGGCTCATCTTTGCCAACATCATCGTCACCTCAATTTTCAAATGGATCATTTAAGTTGCAGCACCAAGTTTCCGAGGTCACAGAAGACCAAGCTCCTGATGGGAAATCTTCATTTGTTCTTTTCTCGGCCCGCAAGGTTTTGAAGCAGAAAAAACTAGGAAATGTACCCAGTTTAGGTTTTGGGGCATTAGTCTCTCCTGGAAAGGAAGTCCCAGCAGGCCCTCAAGTAATTCAGCGTGATCCCCATCGCTGCCAAAGCTGTGGAGCTTATGCAAATATTTATTGCAACATTTTGATTGGGTCAGGCCAGTGGCAGTGTGTAATATGTTGGAAACTGAATGGAAGTGAAGGCGAGTATGTTGCTTCCAGCAAGGAAGACCTTCGCAGATTTCCTGAACTTTCATCACCCATGGTTGATTATGTGCAAACTGGGAATAAGAGACCTGGTTTTGTTCCGGTTTCAGATTCGAGAATGACTGCACCAATTGTTCTTGTGATAGATGAGTGCTTAGATGAACCTCACCTACAACATCTACAGAGCTCATTGCATGCTTTTGTTGATTCACTTCCCCCTACAACCAGGATAGGCATTGTTCTTTATGGCCGCACTGTCTCAGTTTATGACTTTTCGGAGGAGTCAGTTGCATCTGCTGATGTGCTTCCTGGGGACAAATCACCAACTCAAGAATCTTTGAAGGCATTGATTTATGGTACTGGTATATACTTGTCGCCAATGCATGCCTCACTTCCTGTAGCGCATGCCATGTTCTCATCATTGAGGCCATACAAGTTGAACATGCCTGAAGCTTCCAGGGATCGGTGTCTAGGTACTGCCGTTGAGGTTGCTCTTGCTATAATTCAGGGACCTTCTGCAGAACTGTCCCGAGGGGTAGTCAAAAGGTCAGGGGGCTACAGCAGAATTATTGTCTGTGCTGGTGGACCCAATACTTATGGCCCTGGATCTGTTCCTCACTCTTTTAGTCACCCTAATTATCCTTATATGGAAAAGACAGCATTGAAATGGATGGAAAATCTTGGTCGTGTGGCTCATAGTCATAATACTGTGGTTGACATTTTATGTGCGGGAACTTGCCCTGTCAGAGTTCCTATTTTGCAGCCTCTTGCAAAAGCATCAGGTGGTGTTTTGGTTCTCCATGATGATTTTGGGGAAGCCTTTGGTGTTAATTTGCAAAGGGCATCTGCCAGAGCAGCAGGCTCCCATGGTCTGTTGGAATTACGCACATCAGATGATATTCTCATAACCCAAGTTGTGGGTCCTGGTGAAGAGGCAAATGTGGACACCCATGAATTCTTTAAAAATGACAGTGCACTTTATATTCAGATGTTGAGTGTTGAAGAAACTCAGAGCTTCTCTATATCCATGGAAACTAAAGGAGATATCAAAAGTGATAGCATGTTTTTCCAGTTTGCAATTCTGTATTCAAATGTCTATCAAGCTGATGTGTCGAGGGTGATTACTGTTAGGCTGCCAACTGTAGATAGTATTTCAGGATATCTTGAGAGTGTTCAAGATGAAGTGGCAGCAGTCCTCATTGCAAAGAGGACTCTACTTCGTGCAAAAAACTATTCTGATGCAATTGACATGCGAGCCATAGTAGACGAAAGAATCAATGACATTGCTATGAAATTTGGCTCCCAATTACCCAAGTCAAAACTTTATCGTTTCCCAAAGGAGTTATCTCTCTTACCTGAGCTCCTTTTCCATCTCAAAAGAGGGCCACTATTGGGAAGCATTATTGGTCATGAAGATGAGAGGTCTGTGCTGCGAAGCCTGTTTTTAAACGCATCATTTGATCTATCACTTCGAATGGTTGCTCCTCGCTGTTTAATGCACAGGGAGGGGGGTACTTTTGAGGAGCTACCAGCTTATGATCTTGCTATGCAGTCTGATGCTGCTGTTGTTCTTGATCATGGCACTGATGTCTTCATTTGGTTGGGTGCTGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCATTAGCTGCTTGTCGGACATTGGCTGAGGAGCTTACTGAATTGCGTTTTCCAGCTCCTCGTATCCTTGCATTTAAGGAGGGTAGCTCACAGGCTCGATATTTTGTTTCTCGTCTCATCCCAGCACACAAGGATCCTCCTTATGAGCAGGAGGCGAGATTCCCACAACTTAGGTCATTGACACCAGAGCAACGGACAAAGCTAAAAAGCAGTTTCCTTCACTTTGATGATCCTAGTTTCTGCGAGTGGATGAAAAGTTTGAAAGTGGTACCACCAGAAGTTAGTTGA 2628 0.4482 MANPTQPDVGSSVTVSPSNPDRQNPYHEQSPIVPPHPSFTATPRFPPPKLQQNQASSPSMRTPPVLSPANGVKTGSPVPHLSTPPGPPAFTKPVRPAAVPFRTSPASPQPVAVSSGSSLPTSSSPQFSNGSFKLQHQVSEVTEDQAPDGKSSFVLFSARKVLKQKKLGNVPSLGFGALVSPGKEVPAGPQVIQRDPHRCQSCGAYANIYCNILIGSGQWQCVICWKLNGSEGEYVASSKEDLRRFPELSSPMVDYVQTGNKRPGFVPVSDSRMTAPIVLVIDECLDEPHLQHLQSSLHAFVDSLPPTTRIGIVLYGRTVSVYDFSEESVASADVLPGDKSPTQESLKALIYGTGIYLSPMHASLPVAHAMFSSLRPYKLNMPEASRDRCLGTAVEVALAIIQGPSAELSRGVVKRSGGYSRIIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTALKWMENLGRVAHSHNTVVDILCAGTCPVRVPILQPLAKASGGVLVLHDDFGEAFGVNLQRASARAAGSHGLLELRTSDDILITQVVGPGEEANVDTHEFFKNDSALYIQMLSVEETQSFSISMETKGDIKSDSMFFQFAILYSNVYQADVSRVITVRLPTVDSISGYLESVQDEVAAVLIAKRTLLRAKNYSDAIDMRAIVDERINDIAMKFGSQLPKSKLYRFPKELSLLPELLFHLKRGPLLGSIIGHEDERSVLRSLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTELRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTPEQRTKLKSSFLHFDDPSFCEWMKSLKVVPPEVS 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0118 875 FunFam Protein transport protein SEC23 276 521 - -
Lele08g0118 875 Pfam Sec23/Sec24 zinc finger 196 234 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lele08g0118 875 Pfam Sec23/Sec24 trunk domain 278 504 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lele08g0118 875 MobiDBLite consensus disorder prediction 30 44 - -
Lele08g0118 875 Pfam Sec23/Sec24 helical domain 627 723 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lele08g0118 875 Gene3D Sec23/Sec24 helical domain 614 734 - -
Lele08g0118 875 Gene3D - 184 249 - -
Lele08g0118 875 MobiDBLite consensus disorder prediction 80 94 - -
Lele08g0118 875 FunFam Protein transport protein SEC23 187 249 - -
Lele08g0118 875 SUPERFAMILY beta-sandwich domain of Sec23/24 21 624 - -
Lele08g0118 875 MobiDBLite consensus disorder prediction 107 145 - -
Lele08g0118 875 Gene3D Severin 742 836 IPR029006 -
Lele08g0118 875 MobiDBLite consensus disorder prediction 45 64 - -
Lele08g0118 875 SUPERFAMILY vWA-like 277 509 IPR036465 -
Lele08g0118 875 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 156 871 IPR037364 -
Lele08g0118 875 CDD trunk_domain 276 513 - -
Lele08g0118 875 MobiDBLite consensus disorder prediction 1 145 - -
Lele08g0118 875 SUPERFAMILY Zn-finger domain of Sec23/24 188 260 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lele08g0118 875 Pfam Sec23/Sec24 beta-sandwich domain 522 613 IPR012990 -
Lele08g0118 875 SUPERFAMILY Helical domain of Sec23/24 626 726 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lele08g0118 875 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 728 868 IPR036180 -
Lele08g0118 875 FunFam Protein transport protein SEC23 742 839 - -
Lele08g0118 875 Gene3D von Willebrand factor, type A domain 276 521 IPR036465 -
Lele08g0118 875 MobiDBLite consensus disorder prediction 1 26 - -
Lele08g0118 875 CDD gelsolin_like 728 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0118 Lele-ChrLele08 719109 723061 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0300 05 1692170 1695936 Lele08g0118 08 719109 723061 hybridization
Lele06g0115 06 717581 721364 Lele08g0118 08 719109 723061 hybridization