Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0300 ATGGCTAACCCAACACAACCAGATGTTGGGTTCTCCGTCACTGTCTCCCCTTCTAATCCAGACAGACAGAATCCTTACCATGAGCAAAGTCCAATGGTCCCTCCCCCTCTAAGTTTCGCTGCAACACCTAGATTTCCTCCACCCAAATTACAACAAAATCAAGCATCTTCACCTACCACGAGAACCCCACCCGTTTTATCACCAGCCAACGGGGTTAAAACAGGCAGTCCTGTTCCTCATTTGAGTACTCCCCCTGGGCCTCCTGTTTTTACAAAACCTGTCCGTCCAGCTGCTGTTCCTTTTCGCACATCACCTGCATCACCTCAGCCAGTTGCTTTATCTTCAGGCTCATCTTTACCAACATCATCGTCACCTCAATTTTCAAATGGATCATTTGAGTTGCAGCACCAAGTTTCCGACGTTACAGAAGACCAAGCTCCTCTCGGGGAATCTTCATTTGTTCTTTTCTCGGCCCACAAGGTTTTGAAGCAGAAAAAACTAGCAAATGTACCCAGTTTAGGTTTTGGGGCATTAGTCTCTCCTGGAAAGGAAGTCCCAGCATGCCCTCAAGTAGTTCAGCGCGATCCCCATCGCTGCCAAAGCTGTGGAGCTTATGCCAATATTTATTGCAACATTTTGATTGGATCAGGCCAGTGGCAGTGTGTAATATGTCGGAAACTGAATGGAAGTGACGGCGAGTATGTTGCTTCCAGCAAGGAAGACCTTCGCAGATTTCCAGAACTTGCATCACCCATGGTTGATTATGTGCAAACTGGGAATAAGAGACCTGGCTTTATTCCAGTTTCAGATTCGAGAATGACTGCTCCGATTGTTCTTGTGATAGATGAGTGCTTAGATGAACCTCACCTACACCATCTACAGAGTTCATTGCATGCTTTTGTTGATTCACTACCCCCTACAACAAGGATAGGCATCGTACTCTATGGCCGCACTGTGTCAGTTTATGACTTTTCAGAGGAGTCAGTTGCGTCTGCTGATGTGCTTCCTGGGGACAAATCACCGGCTCAAGAATCTTCGAAGGCATTGATTTATGGTACTGGTATATACTTGTCGCCGATGCACGCCTCACTTCCTGTAGCACATGCCATATTCTCATCATTGAGGCCATACAAGTTGAACATGCCTGAAGCTTCCAGGGATCGGTGTCTAGGTACTGCTGTTGAGGTTGCTCTTGCTATAATTCAGGGACCTTCTGCAGAACTGTCCCGAGGGTTAGTCAAAAGGTCAGGGGGCTACAGCAGAATTATTGTCTGCGCTGGTGGACCCAACACTTATGGCCCTGGATCTGTTCCTCACTCTTTTAGTCATCCTAATTATCCTCATATGGAAAAGACAGCATTGAAATGGATGGAAAATCTAGGTCATGTGGCTCACAGTCATAATACTGTGGTTGACATTTTATGTGCTGGAACATGCCCTGTCAGAGTTCCTATTTTGCAGCCTCTTGCAAAAGCATCAGGTGGTGTTTTGGTTCTCCATGATGATTTTGGGGAAGCCTTTGGCGTTAATTTGCAAAGGGCATCTTCCAGAGCAGCAGGCTCCCATGGTTTGTTGGAATTACGCACATCAGATGATATTCTCATAACCCAAGTTGTGGGTCCTGGTGAAGAGGCATATGTGGACACCCATGAATTCTTTAAAAATGACAGTGCACTTTATATTCAGATGCTGAGTGTTGAAGAAACTCAGAGCTTCTCTATATCCATGGAAACTAAAGGAGATATCAAAAGTGATGGCGTGTTTTTCCAGTTTGCAATTCTGTATTCAAATGTCTATCAAGCTGATGTGTCGAGGGTGACTACTGTTAGGCTGCCAACTGTAGATAGTATTTCAGGATATCTTGAGAGTGTTCAAGATGAAGTGGCAGCAGTCCTCATTGCAAAGAGGACTCTACTTCGGGCAAAAAACTATTCTGATGCAATTGATATGCGAGCCACAGTAGACGAAAGAATCAGTGACATTGCTATGAAATTTGGCTCCCAATTACCCAAGTCAAAACTCTATCGTTTCTCAAAGGAGTTATCTCTCTTACCTGAGCTCCTTTTCCATCTCAAAAGAGGGCCACTATTGGGAAGCATTATTGGTCATGAAGATGAGAGGTCTGTGCTACGAAGCCTGTTTTTAAATGCATCATTTGATCTATCACTCCGGATGGTTGCTCCTCGCTGTTTAATGCACAGGGAGGGTGGGACTTTTGAGGAGCTACCAGCTTATGATCTTGCTATGCAGTCTGATGCTGCTGTTGTTCTTGATCATGGCACTGATGTTTTCATTTGGTTGGGTGCTGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCATTAGCTGCTTGCCGGACATTGGCTGAGGAGCTTACTGAATTGCGTTTTCCAGCTCCTCGCATCCTCGCATTTAAGGAGGGTAGCTCACAGGCTCGATATTTTGTTTCTCGTCTCATCCCAGCACACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTCCCACAGCTTAGGTCATTGACACCAGAGCAACGGACAAAGCTAAAAAGCAGTTTCCTTCACTTCGATGATCCTAGTTTCTGCGAATGGATGAAAAGTTTGAAAGTGGTACCCCCAGAAGTTAGTTGA 2628 0.4551 MANPTQPDVGFSVTVSPSNPDRQNPYHEQSPMVPPPLSFAATPRFPPPKLQQNQASSPTTRTPPVLSPANGVKTGSPVPHLSTPPGPPVFTKPVRPAAVPFRTSPASPQPVALSSGSSLPTSSSPQFSNGSFELQHQVSDVTEDQAPLGESSFVLFSAHKVLKQKKLANVPSLGFGALVSPGKEVPACPQVVQRDPHRCQSCGAYANIYCNILIGSGQWQCVICRKLNGSDGEYVASSKEDLRRFPELASPMVDYVQTGNKRPGFIPVSDSRMTAPIVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRIGIVLYGRTVSVYDFSEESVASADVLPGDKSPAQESSKALIYGTGIYLSPMHASLPVAHAIFSSLRPYKLNMPEASRDRCLGTAVEVALAIIQGPSAELSRGLVKRSGGYSRIIVCAGGPNTYGPGSVPHSFSHPNYPHMEKTALKWMENLGHVAHSHNTVVDILCAGTCPVRVPILQPLAKASGGVLVLHDDFGEAFGVNLQRASSRAAGSHGLLELRTSDDILITQVVGPGEEAYVDTHEFFKNDSALYIQMLSVEETQSFSISMETKGDIKSDGVFFQFAILYSNVYQADVSRVTTVRLPTVDSISGYLESVQDEVAAVLIAKRTLLRAKNYSDAIDMRATVDERISDIAMKFGSQLPKSKLYRFSKELSLLPELLFHLKRGPLLGSIIGHEDERSVLRSLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTELRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTPEQRTKLKSSFLHFDDPSFCEWMKSLKVVPPEVS 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0300 875 Pfam Sec23/Sec24 trunk domain 278 504 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lele05g0300 875 Gene3D Sec23/Sec24 helical domain 615 734 - -
Lele05g0300 875 MobiDBLite consensus disorder prediction 80 94 - -
Lele05g0300 875 Pfam Sec23/Sec24 beta-sandwich domain 522 613 IPR012990 -
Lele05g0300 875 SUPERFAMILY beta-sandwich domain of Sec23/24 17 624 - -
Lele05g0300 875 Pfam Sec23/Sec24 zinc finger 196 234 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lele05g0300 875 SUPERFAMILY Zn-finger domain of Sec23/24 187 260 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lele05g0300 875 MobiDBLite consensus disorder prediction 107 130 - -
Lele05g0300 875 SUPERFAMILY Helical domain of Sec23/24 626 726 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lele05g0300 875 MobiDBLite consensus disorder prediction 29 43 - -
Lele05g0300 875 Gene3D von Willebrand factor, type A domain 276 521 IPR036465 -
Lele05g0300 875 CDD trunk_domain 276 513 - -
Lele05g0300 875 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 159 871 IPR037364 -
Lele05g0300 875 SUPERFAMILY vWA-like 277 513 IPR036465 -
Lele05g0300 875 MobiDBLite consensus disorder prediction 47 69 - -
Lele05g0300 875 FunFam Protein transport protein SEC23 742 839 - -
Lele05g0300 875 MobiDBLite consensus disorder prediction 1 130 - -
Lele05g0300 875 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 728 868 IPR036180 -
Lele05g0300 875 Gene3D - 182 249 - -
Lele05g0300 875 Pfam Sec23/Sec24 helical domain 627 723 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lele05g0300 875 Gene3D Severin 742 836 IPR029006 -
Lele05g0300 875 FunFam Protein transport protein SEC23 187 249 - -
Lele05g0300 875 MobiDBLite consensus disorder prediction 1 26 - -
Lele05g0300 875 CDD gelsolin_like 728 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0300 Lele-ChrLele05 1692170 1695936 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0300 05 1692170 1695936 Lele07g0318 07 1760980 1764779 hybridization
Lele05g0300 05 1692170 1695936 Lele08g0118 08 719109 723061 hybridization