Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1528 ATGGAAGAGGGGGAAGCCAACAAAGAAATCGAAGTCGCTCCAGCACTTATTGCAGTTCACCCTTCCCAGAAATCTGTTGCCGTTGCCGTTGGACCAAGCTTACGTGTATTCGACCTTCATGCTGGTTCCGCGGCTTCATTGATTGATGACTCCGGTGGCCCCTTTCATAGAGATTCTATCAGAGCTATTCGATTTGGTTCAAAAGGGAAGCTCTTTGTATCCGCAGGCGATGACAAAACTGTCAAGATATGGTCAACTGCAAATTGGCGCTGCATTTGTGCTGTGTCCTCAGAAAAGAGAGTTAGTGCAGTTGCTATAAGCAATGATGGTTCTTATGTGTGTTTCGCTGACAAATTTGGTGTTGTCTGGGCTGTGGATTTGGCTGGATATGATGGCGATCAACCATTAGTTGATAAGAAAGCAACCCCGCTTCTTTCTCATTATTGTAGTATCATCACTAATCTGGAATTTTCACCTGATGGTCGGTTCATTATCAGTGCTGATCGGGATTTCAAAATCCGTGTTACTATTTTTCCCAGCAAGCCTTTAAGTGGAGCTCATGAGATACATAGCTTCTGTCTTGGTCATACAGAGTTTGTTTCCTGCATTGCCTTTGTTCATGATCAGGGTTGCCCTCAAGGCCTTCTCATATCTGGTAGCGGTGATTCAACAGTCCGTTTGTGGGACACTTCATCTGGAGCACTCCTAGATACCTGTGAGGTTGCAGATAAGGCAGGATTTACGGAGTCTAATGATGAAGCAGAGGAGCATGCCTATGCTGTGACTGACTTATGCACTATCATGGATGGGTCGCTTGTTGCAGTGGCCCTTCAGAGGCAAGCCTCACTCTCTTATTGGATTGTTTTCTTGGAAGGAATAATATTGCTGAAGTGCAACATTTCTGCTCGAGCGCTTTCTGTTGCCAAGGTTATTTCTATTGCAGGAGAAGCGTTTATCCCTACCAGCTTGGGAACCAGCTCCTGTACTGGGATGTTGTGGATGGTAACGGGTGTGTCTAGTCTTCCAGGTTCTAGTAATCCTGCCTTGGCTCGTGTTCGAGTAATTTCTGGTTTCGATGTTGAACAAGACCCTGCAGTTGTTGAAGACGACAAGATCCCTGGGGGCGAGAAGTTGCTGGAAACATTGCAGGTGAGCACATCTGTTGATGAGAATGCTTTCTTGGCAGCTGCTGAAGCCGTCAAGACAGCAATGTGCAATCTATTGATTAAAAAGCAATACTCTACAGAGAATAGAGAATCTAGGAAGAGGACCAGAAATGATAGAAAATTAAAAACGCAAGATAGTTGA 1308 0.4511 MEEGEANKEIEVAPALIAVHPSQKSVAVAVGPSLRVFDLHAGSAASLIDDSGGPFHRDSIRAIRFGSKGKLFVSAGDDKTVKIWSTANWRCICAVSSEKRVSAVAISNDGSYVCFADKFGVVWAVDLAGYDGDQPLVDKKATPLLSHYCSIITNLEFSPDGRFIISADRDFKIRVTIFPSKPLSGAHEIHSFCLGHTEFVSCIAFVHDQGCPQGLLISGSGDSTVRLWDTSSGALLDTCEVADKAGFTESNDEAEEHAYAVTDLCTIMDGSLVAVALQRQASLSYWIVFLEGIILLKCNISARALSVAKVISIAGEAFIPTSLGTSSCTGMLWMVTGVSSLPGSSNPALARVRVISGFDVEQDPAVVEDDKIPGGEKLLETLQVSTSVDENAFLAAAEAVKTAMCNLLIKKQYSTENRESRKRTRNDRKLKTQDS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1528 435 SUPERFAMILY WD40 repeat-like 17 276 IPR036322 GO:0005515
Lele07g1528 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 233 - -
Lele07g1528 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 238 IPR001680 GO:0005515
Lele07g1528 435 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 99 366 - -
Lele07g1528 435 ProSitePatterns Trp-Asp (WD) repeats signature. 216 230 IPR019775 -
Lele07g1528 435 SMART WD40_4 88 124 IPR001680 GO:0005515
Lele07g1528 435 SMART WD40_4 40 85 IPR001680 GO:0005515
Lele07g1528 435 SMART WD40_4 138 177 IPR001680 GO:0005515
Lele07g1528 435 SMART WD40_4 185 229 IPR001680 GO:0005515
Lele07g1528 435 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 23 424 IPR028884 GO:0036265
Lele07g1528 435 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 13 98 - -
Lele07g1528 435 Pfam WD domain, G-beta repeat 189 229 IPR001680 GO:0005515
Lele07g1528 435 Pfam WD domain, G-beta repeat 146 175 IPR001680 GO:0005515
Lele07g1528 435 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Lele07g1528 435 PANTHER WD40 REPEAT PROTEIN 4 13 426 IPR028884 GO:0036265
Lele07g1528 435 MobiDBLite consensus disorder prediction 416 435 - -
Lele07g1528 435 Gene3D - 7 288 IPR015943 GO:0005515
Lele07g1528 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 85 IPR001680 GO:0005515
Lele07g1528 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1528 Lele-ChrLele07 9410203 9413278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele07g1528 56 236 Miscellaneous Gene Families AT5G08390 25.137 4.60e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1528 07 9410203 9413278 Lele07g1528 07 9410203 9413278 ECH
Lele05g1467 05 9415676 9418896 Lele07g1528 07 9410203 9413278 hybridization
Lele06g1323 06 8478036 8480054 Lele07g1528 07 9410203 9413278 hybridization