Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1467 ATGGAAGATGGGGAAGCCAACAAAGAAATCGAAGTCGCTCCAGCACTTATTGCCGTTCACCCTTTCCAGAAATCTGTTGCCGTTGCCGTTGGACCAAGCTTACGTGTATTCGACCTTCATGCTGGTTCCACGGCTTCGTTGATTGATGACTCCGGTGGCCCCTTTCATAGAGATTCTATCAGAGCTATTCGATTTGGTTCAAAAGGGAAGCTCTTTGTATCCGCAGGTGATGACAAAACTGTCAAGATATGGTCAACTGAAAATTGGCGCAGCATTTGTAATGTGTCCTCAGAAAAGAGAGTTAGTGCAGTCGCTATAAGCAATGATGGTTCTTATGTGTGTTTCGCTGACAAATTTGGTGTTGTCTGGGTTGTGGATCTGGCTGGATATGGTGGCGATCAACCATTAGTTGATAAGAAAGCAACCCCGCTTCTTTCTCATTATTGTAGTATCATCACTAATCTGGAATTTTCACCTGATGGTCGGTTCATTGTCAGTGCTGATCGGGATTTCAAAATCCGTGTTACTATTTTTCCCAGCAAGCCTTTAAGTGGATCTCATGAGATACAAAGCTTCTGTCTTGGTCATACAGAGTTTGTTTCCTGCATTACCTTTGTTCATGATGAGGGTTGCCCTCAAGGCCTTCTCATATCTGGTAGCGGTGATTCAACAGTCCGTTTGTGGGACACTTCATCTGGAGCACTCCTAGATACCTGTGAGGTTGCAGATAAGGCAGGAGTTACGGAGTCTAATGATGAACCAGAGTATGCCTATGCTGTGACTGACTTATGCACTATCATGGATGGATCGCTTGTTGCAGTGTCCCTTCAGAGCTTGGAAGGAATAATATTGCTGAAGTGCAACCTTTCTGCTCGAACACTCTCTGTTGCCAAGGTTATTTCGATTGCAGGAGAAGCGTTTATCCCTACCAGCTTGGGAACTAGCTCCTGTAATGGGATGTTGTGGATGGTAACGGGTGTGTCTAGTCTACCAGGTTCTAGTAATCCCGCCTTGGCTCGTGTTCGAGTAATTTCTGGTTTCGATGTTGAACAAGACCCAGCAGTTTTTGAAGACGACAAGATCCCTGGGGGCGAGAAGTTGCTGGAAACATTGCAGGGGAGCACATCTGTTGATGAGAATGCTTTCTTGGCAGCTGCTGAAGCCGTCAAGACAGCAATGTGCAATCTATTGATTAAAAAGCAATACTCTACAGAGAATAGAGAATCTAGGAAGAGGACCAGAAATGATAGAAAACTAAAAACGCAAGATAGTTAA 1275 0.4471 MEDGEANKEIEVAPALIAVHPFQKSVAVAVGPSLRVFDLHAGSTASLIDDSGGPFHRDSIRAIRFGSKGKLFVSAGDDKTVKIWSTENWRSICNVSSEKRVSAVAISNDGSYVCFADKFGVVWVVDLAGYGGDQPLVDKKATPLLSHYCSIITNLEFSPDGRFIVSADRDFKIRVTIFPSKPLSGSHEIQSFCLGHTEFVSCITFVHDEGCPQGLLISGSGDSTVRLWDTSSGALLDTCEVADKAGVTESNDEPEYAYAVTDLCTIMDGSLVAVSLQSLEGIILLKCNLSARTLSVAKVISIAGEAFIPTSLGTSSCNGMLWMVTGVSSLPGSSNPALARVRVISGFDVEQDPAVFEDDKIPGGEKLLETLQGSTSVDENAFLAAAEAVKTAMCNLLIKKQYSTENRESRKRTRNDRKLKTQDS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1467 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 233 - -
Lele05g1467 424 SUPERFAMILY WD40 repeat-like 17 276 IPR036322 GO:0005515
Lele05g1467 424 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Lele05g1467 424 Pfam WD domain, G-beta repeat 146 175 IPR001680 GO:0005515
Lele05g1467 424 Pfam WD domain, G-beta repeat 193 229 IPR001680 GO:0005515
Lele05g1467 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Lele05g1467 424 PANTHER WD40 REPEAT PROTEIN 4 13 415 IPR028884 GO:0036265
Lele05g1467 424 Gene3D - 45 295 IPR015943 GO:0005515
Lele05g1467 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 238 IPR001680 GO:0005515
Lele05g1467 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 94 IPR001680 GO:0005515
Lele05g1467 424 SMART WD40_4 88 126 IPR001680 GO:0005515
Lele05g1467 424 SMART WD40_4 138 177 IPR001680 GO:0005515
Lele05g1467 424 SMART WD40_4 44 85 IPR001680 GO:0005515
Lele05g1467 424 SMART WD40_4 185 229 IPR001680 GO:0005515
Lele05g1467 424 ProSitePatterns Trp-Asp (WD) repeats signature. 216 230 IPR019775 -
Lele05g1467 424 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 23 413 IPR028884 GO:0036265
Lele05g1467 424 MobiDBLite consensus disorder prediction 405 424 - -
Lele05g1467 424 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 99 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1467 Lele-ChrLele05 9415676 9418896 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1467 05 9415676 9418896 Lele05g1467 05 9415676 9418896 ECH
Lele05g1467 05 9415676 9418896 Lele07g1528 07 9410203 9413278 hybridization
Lele05g1467 05 9415676 9418896 Lele08g1318 08 8420015 8425916 hybridization