LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele05g1025	ATGGCTTCTGCCCCCATTCTTCATCTTCTCTTCCTCTTTTCTCTCATCTCCTTCACTTCATCCTTCGCATCCATTACTCTTCCTATCTCGCCCTTACACGCCAAACACCCTTCTTCCGATCCCTTTCAGACCCTCAAAGTCGTTGCCTCTGCTTCCCTGACCAGAGCTCACCACCTCAAGCACCGTAAATCCAATTCCAATTCTTCTCTCACCAAGACCCCCGATTACCCCAAAAGCTACGGCGGATACTCCGTCGATCTCAGATTCGGCACGCCGCCTCAAACCTTCCCTTTCCTCTTGGACACCGGAAGTAGCCTCGTCTGGTTCCCTTGCTCCTCTCATTATCTCTGTTCCAGATGTTCCTTCCCCACCATCGATGCCACTAAACCCCCCAAGTTCATCCCTAAGAATTCTTCCTCCGCCAAGTTCGTCGGTTGCAGGAATCCAAAATGTGGTTGGATTTTCGGCCCCGATCTTCAGTCTCGATGCCAGAAATGCGAACCCAATGCCCAGAACTGCTCACAGATTTGCCCCACTTATGTGATTCAGTATGGTTCGGGCTCAACCGCTGGCTTGTTACTCTTAGAAAGCCTCGACCTTCCTGGGAAAATAGTGCCCGATTTTCTCGTCGGTTGCTCCATCATGTCGATCCGTCAACCCGCCGGAATCGCCGGGTTTGGTCGAGGGCCTGAATCTCTGCCTTCGCAGATGGGTCTCAAGAGATTCTCTTACTGTTTGATCTCTCACCGGTTCGACGACACCAACGAAAGCAGTGACCTCATTCTTCAGAGCGAGTCCTCCGGTGGCACTAAAACCGATGGACTTAGCTACACTCCATTCCAAAAAAACCCAGCTGCGAACAACCCAGCATTCCGCGAGTATTATTACTTAACCATTCGAAAGATTATCATCGGTGGCGAGCGAGTCAAGATTCCGTCCAAGCTTTTTGAGCCAGATTCAGACGGGAATGGGGGCACCATAGTGGACTCAGGCTCCACCTTCACATTCATGGAAAGGCCCATTTTGGACATGGTGGCTCAAGCATTCGAGAAACAGATGGCAAATTATACAAGAGCCAAGGACGTAGAAACCCAATCCGGTTTGAGCCCCTGTTTCGATTTTTCAGGTCTGGACTCGATTAATTTCCCGGAATTCACTATCAAATTCAGAGGGGGCGCCAATATGACATTGCCCGTGGAGAACTACTTCTCGTTGGTGGACGAATCGCAGGTTGCCTGCCTGACGGTTCTCTCGGACAAAGGGACCGTCCCGGCGGTGGCCAGGGGGCCGGCGGTGATTCTAGGAAACTATCAGCAGCAGAATTTCTACGTGGAATATGACTTGGAAAATGAGAGGTTTGGATTTGGACCTCGAAGTTGCAAGAAGGGAACTTAG	1395	0.509	MASAPILHLLFLFSLISFTSSFASITLPISPLHAKHPSSDPFQTLKVVASASLTRAHHLKHRKSNSNSSLTKTPDYPKSYGGYSVDLRFGTPPQTFPFLLDTGSSLVWFPCSSHYLCSRCSFPTIDATKPPKFIPKNSSSAKFVGCRNPKCGWIFGPDLQSRCQKCEPNAQNCSQICPTYVIQYGSGSTAGLLLLESLDLPGKIVPDFLVGCSIMSIRQPAGIAGFGRGPESLPSQMGLKRFSYCLISHRFDDTNESSDLILQSESSGGTKTDGLSYTPFQKNPAANNPAFREYYYLTIRKIIIGGERVKIPSKLFEPDSDGNGGTIVDSGSTFTFMERPILDMVAQAFEKQMANYTRAKDVETQSGLSPCFDFSGLDSINFPEFTIKFRGGANMTLPVENYFSLVDESQVACLTVLSDKGTVPAVARGPAVILGNYQQQNFYVEYDLENERFGFGPRSCKKGT	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele05g1025	464	FunFam	Aspartyl protease family protein	266	463	-	-
	Lele05g1025	464	ProSitePatterns	Eukaryotic and viral aspartyl proteases active site.	98	109	IPR001969	GO:0004190\|GO:0006508
	Lele05g1025	464	Gene3D	Acid Proteases	264	464	IPR021109	-
	Lele05g1025	464	PANTHER	OS07G0603500 PROTEIN-RELATED	34	461	-	-
	Lele05g1025	464	Pfam	Xylanase inhibitor N-terminal	83	261	IPR032861	-
	Lele05g1025	464	Gene3D	Acid Proteases	56	258	IPR021109	-
	Lele05g1025	464	PRINTS	Pepsin (A1) aspartic protease family signature	432	447	IPR001461	GO:0004190\|GO:0006508
	Lele05g1025	464	PRINTS	Pepsin (A1) aspartic protease family signature	89	109	IPR001461	GO:0004190\|GO:0006508
	Lele05g1025	464	PRINTS	Pepsin (A1) aspartic protease family signature	326	337	IPR001461	GO:0004190\|GO:0006508
	Lele05g1025	464	SUPERFAMILY	Acid proteases	79	460	IPR021109	-
	Lele05g1025	464	Pfam	Xylanase inhibitor C-terminal	295	456	IPR032799	-
	Lele05g1025	464	CDD	pepsin_A_like_plant	82	460	IPR034161	-
	Lele05g1025	464	ProSiteProfiles	Peptidase family A1 domain profile.	83	456	IPR033121	-
	Lele05g1025	464	FunFam	Aspartic proteinase nepenthesin-2	56	260	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele05g1025	Lele-ChrLele05	6382904	6384298	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele05g1025	81	462	Miscellaneous Gene Families	AT1G44130	24.940	3.88e-12	65.9

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele05g1025	05	6382904	6384298	Lele05g1025	05	6382904	6384298	ECH
	Lele05g1025	05	6382904	6384298	Lele07g1063	07	6428148	6429542	hybridization
	Lele05g1025	05	6382904	6384298	Lele08g0875	08	5536337	5537731	hybridization