Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0971 ATGCCCCAGGGGATAAACAGGGCTGAGAGTTGGTTGACCACAAATTATTCTGTTGAGGTTGCAAAACTACAAATGGATAATCAACAAATAAGTGATGTAGCCGATGAGAAGTTCACATGGAGAATTGAAAACTTCTCCAGGTTGAAGTCTAAAAAATTGTATTCCGAGACTTTCATTCTGGGCGGCTATCCATGGAGGATTCTTATATATCCTAAAGGGAACAATGTTGATTACTTGTCTTTATATTTGGATACTGCGGATGCCAAGAGTTTATCTGCTGGTTGGTCCAGATATGCAAGTTTCCGCTTGGCGGTAATTGATCAAGTAAATGAGCAGACCACGGTCACAAAAGAGACCCAACATCAATTCAATTCAAGAGAGAGTGACTGGGGGTTCACATCATTTATACCTTTGAGTGAACTTCATGACCCTAAGAAGGGTTATATTGTAAAAGATACATGTGTAATTGATGTTGACGTTTCTATTCCCAAGTCTGGAGTAGAGAATCAAGTAGATCAAGCATCTGGTGCAATATCCCTGGATTCTGGAGATAAAACTGGACAAATGCAAGTGGAAATTCCACGGCAAGAAGCTAAAACTTCACCACCTTCTGCATGTGTTTCCATTGAGCCTGCTCAGCATACTGTTAACCCTTCATTGTCTGTAGGACTAACCTCAAACCCAATGGATGAGCTTTTGGATTTCAGGGGTCTTGGGAAGATAGAAAATGTTTTTGTCCCACTCCTGGAGGAAGTATGTTCCAAGCACCCATCACTCATTGAATGTCAGCGGAAGAGAACAGGACGATTTGTTGAATGGGCATTCACAGCTTTGGGCAGAGTTCTACATTTCTTGAAGACTAAAAGGGTGAAAGACATGAATGATGAGACTTGTGAGCATCTTCAAATTTTATGGGATGAACTTGAGACGTTTAGATTTGATTTGACTTGGTTAGAGCCTCATGTTCAATCTGCTTTAAACATGAAGAACTACTTGGAGAAGGCAATGCAGGTGAAGAAGTTGAAGGATAACGTGAGTGCTCTCGAGATGGAAATGAAGAGGCTTAAAGCAAAACTTGCTGCTGTAGAGATAGATCTTGAAATAGCAAAAGGAGACTTGGTGCAAGCAGAAGAAGGTTTGGAAGAGAGGGATTTGGATGGTGAACTCGGATATGGGAGACCATAG 1185 0.4127 MPQGINRAESWLTTNYSVEVAKLQMDNQQISDVADEKFTWRIENFSRLKSKKLYSETFILGGYPWRILIYPKGNNVDYLSLYLDTADAKSLSAGWSRYASFRLAVIDQVNEQTTVTKETQHQFNSRESDWGFTSFIPLSELHDPKKGYIVKDTCVIDVDVSIPKSGVENQVDQASGAISLDSGDKTGQMQVEIPRQEAKTSPPSACVSIEPAQHTVNPSLSVGLTSNPMDELLDFRGLGKIENVFVPLLEEVCSKHPSLIECQRKRTGRFVEWAFTALGRVLHFLKTKRVKDMNDETCEHLQILWDELETFRFDLTWLEPHVQSALNMKNYLEKAMQVKKLKDNVSALEMEMKRLKAKLAAVEIDLEIAKGDLVQAEEGLEERDLDGELGYGRP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0971 394 FunFam Ubiquitin carboxyl-terminal hydrolase 13 33 172 - -
Lele05g0971 394 SUPERFAMILY TRAF domain-like 33 165 - -
Lele05g0971 394 ProSiteProfiles MATH/TRAF domain profile. 35 160 IPR002083 GO:0005515
Lele05g0971 394 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 29 363 - -
Lele05g0971 394 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 33 188 IPR008974 GO:0005515
Lele05g0971 394 SMART math_3 37 141 IPR002083 GO:0005515
Lele05g0971 394 Coils Coil 338 372 - -
Lele05g0971 394 CDD MATH 37 160 IPR002083 GO:0005515
Lele05g0971 394 Pfam MATH domain 42 162 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0971 Lele-ChrLele05 6000406 6002484 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0971 05 6000406 6002484 Lele05g0971 05 6000406 6002484 ECH
Lele05g0971 05 6000406 6002484 Lele07g1010 07 6073472 6075099 hybridization