Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0789 ATGGATTCCTCATCCGCTTCCATTGATGGCTTTTCTGGATCCAAGGACAAGGAGTCAATGGTTGACCCCTTCTTGGTTGAAGCTCTTCAGGACTCTCGTCATCGTCTCCCCATTTTGCGGATGGAACTTGATATTCAGAAGTTCCTGAATAACACTGATCAGCAGCATTTTGAGTTCCAGCACTTCCCTTCTTCCTATCTTCGACTGGCAGCACATCGCATTGCGCAACACTATGGTATGCAAACTATGATTCAAGATTATGGTGTAGATGGACAGGGAAGTAAAATAGTGGTGAGAAAGTTAGCAGAAAGCAGGTATCCCACGGTCCACTTGTCTGAAATACCTGCCAAACAGCCAGAAAATGATAAACCTGAGAAGATAAAAATTGTCATAAGGCCTAGACCTAATAAAAGCAATGTAAATGGCATCAATGAAGCAGGACTGAAAGGAAATCCTATGAGAAGTGTGGAAGAGAGGAAGGAGGAATATGATCGGGCACGAGCACGCATCTTCAGTGGCAGTTCTGATGTAAGTGATGCATTGTCTCATGTCCCTGTGGATGGAAGAAATTGCAGTGTGGGCAAGGATGATAATGAAGCTGGCAAGAACCCTATGACTGATTCAGAAAAATGCACCAGTATCAGGGACACTGGTTCTACTTGTGTTGCCATTTTAAGAGATAGGGAGAAGGATCGTAGTGATCCAGATTATGATCGTAGCTATGGAAGGTATGCTCGGAGTATTCCAAACGTTAACTTGGTGCCTTTTAGTCTTCACAAAGTTCCACCTTCATTTGCTCAATATGACAGTAATTTCAATCAGCTGGGTCAGATGTCACAAACTCAACCTCCACTTGGCTATGGGCCCCCTTCAAGCCCAATAATAAGTCCTTTTTGTGCCACAGGATTGAATCAGACGTCTGGGGATGTTACTTATCTGCAGTGGCCAAGTGCTGCTATGATGTATGCACATTCATATGACCAATTTAGACATGCTGTTTTTCAGGCTCCATTTGGTCAACAGCCGCTGAGCTTTGATTATCCGTAG 1047 0.4394 MDSSSASIDGFSGSKDKESMVDPFLVEALQDSRHRLPILRMELDIQKFLNNTDQQHFEFQHFPSSYLRLAAHRIAQHYGMQTMIQDYGVDGQGSKIVVRKLAESRYPTVHLSEIPAKQPENDKPEKIKIVIRPRPNKSNVNGINEAGLKGNPMRSVEERKEEYDRARARIFSGSSDVSDALSHVPVDGRNCSVGKDDNEAGKNPMTDSEKCTSIRDTGSTCVAILRDREKDRSDPDYDRSYGRYARSIPNVNLVPFSLHKVPPSFAQYDSNFNQLGQMSQTQPPLGYGPPSSPIISPFCATGLNQTSGDVTYLQWPSAAMMYAHSYDQFRHAVFQAPFGQQPLSFDYP 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0789 348 SMART R3H_4 19 101 IPR001374 GO:0003676
Lele05g0789 348 Pfam R3H domain 38 100 IPR001374 GO:0003676
Lele05g0789 348 ProSiteProfiles SUZ domain profile. 105 175 IPR024771 -
Lele05g0789 348 MobiDBLite consensus disorder prediction 135 156 - -
Lele05g0789 348 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 14 338 - -
Lele05g0789 348 Pfam SUZ domain 127 174 IPR024771 -
Lele05g0789 348 ProSiteProfiles R3H domain profile. 35 102 IPR001374 GO:0003676
Lele05g0789 348 SUPERFAMILY R3H domain 12 136 IPR036867 GO:0003676
Lele05g0789 348 MobiDBLite consensus disorder prediction 190 204 - -
Lele05g0789 348 Gene3D - 12 134 IPR036867 GO:0003676
Lele05g0789 348 MobiDBLite consensus disorder prediction 188 213 - -
Lele05g0789 348 CDD R3H_encore_like 34 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0789 Lele-ChrLele05 4668982 4672245 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0789 05 4668982 4672245 Lele05g0789 05 4668982 4672245 ECH
Lele05g0789 05 4668982 4672245 Lele07g0825 07 4739156 4742458 hybridization
Lele05g0789 05 4668982 4672245 Lele08g0629 08 3801833 3805143 hybridization