Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0711 ATGTATCTTTCCCGGCGAATATTTACTAAAGCCCCGCATCTCCGCCACTTCTCACAAGCCGCCGCAGCCGTCGTCCACCAAGAGCCTTTTGACCTCCTCCCACCATTCACGTATCTCGAAGGTTTTCCGAGGCCCGACCCCAGATACGCTGAGACGATACTTGCGATACCTCGCTCCGCTTCTGGAAGTATCATTTCTGCTAAAGAGCGCAAGTCTGGACGAGTGCCTAGCATCGTCTTTGAGCAAGAGGATGGCCAGCACGGCGGCAACAAGCGCCTCATTTCCGTCCGTACGAATCAGATCCGAAAGCTCGTCAACCATCTCGGTCGATCATTCTTTTTGTCCAGACTCTTTGACCTGGAGGTTCGGTCGGAGTTTGAGTCCGAAGATACTGTAGAGAAGATTCGGGTTTTGCCCCGGCTGCTTCACCTGCATGCAGGCAGTGATGTACCATTAAATGTCACATTCATTAGGGCTCCATCACATGCTTTGTTGAAAGTTAATGTTCCTCTTTTATTCAGAGGAGAAGATGTGTCCCCTGGATTGAAGAAAGGTGCTTCTTTGAATACCATCAAAAGGACTGTCAAGTACCTATGCCCAGCAGATATTATCCCTCCATACATCGATGTGGACTTGAGTGAGTTGGATGTGGGACAAAAGATTGTTATGGGAGATCTCAAGTCCGAAACAAGGAAAAAAGAGTATCAGTGTTTTGGCACAAGCTCTGAAACAATTCTAATTAGCAGCCTTCGATGCAGGGTTACTTGGTTTGTTGGCTGGGCCCTGATTCTGGAGTACACAATTGGTGGTTCAGCTGTTGCTTGTGGCATAACTCCAAATATGGCCTTATTTTTTGGGGGTGAGGATAATCTGCCTTTTATTTTGGCTCGTCATACCATCCCAGTTTTTGGAATTGTGGTTGACCCCTGTGCAGCTGTATTAATTCTTCTTGTTACACTACTGTTGTATTTCCCGTTTGGATTAAACGGTGTCTTGTCTGGGGCAGCAATTGTTTTCTTTTCATACATTGGTTTTGATTCAGTGACCAGCACAGCTGAGGAGCCACGAATCTTTATGGCAATGGCTAGAGATGGATTACTGCCTTCTTTCTTCTCAGAAATCAATAGGGGAACCCAGGTCCCTGTAAAGAGTACTCTTGTCACTGGTGTCTTGGCAGCTGCTCTAGCTTTCTTTATTGACGTTTCTCAGTTAGCAGGAATGGTTAGAATTGGAACACTGCTTGCATTCACCACTGTTGCATTTTCAGTTTTGATTCTCAGATATGTTCCACCTGATGAGGTGCCCATTCCATCTTCACTTCAAAAATCCATTGATCCAGTTCGTCCTAGTCCATCGTCACTTGATACATCCATTGACCCAATGTCTTTGCATTTGGGTGGTGGTGTTGAGGCGTTACTGGTGATTCTCATTAGGATAGCCATCGGCATTCACATAATGAGGCAGCCGCCTTGCTTGGACATCCTTTAA 1488 0.4624 MYLSRRIFTKAPHLRHFSQAAAAVVHQEPFDLLPPFTYLEGFPRPDPRYAETILAIPRSASGSIISAKERKSGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFESEDTVEKIRVLPRLLHLHAGSDVPLNVTFIRAPSHALLKVNVPLLFRGEDVSPGLKKGASLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKIVMGDLKSETRKKEYQCFGTSSETILISSLRCRVTWFVGWALILEYTIGGSAVACGITPNMALFFGGEDNLPFILARHTIPVFGIVVDPCAAVLILLVTLLLYFPFGLNGVLSGAAIVFFSYIGFDSVTSTAEEPRIFMAMARDGLLPSFFSEINRGTQVPVKSTLVTGVLAAALAFFIDVSQLAGMVRIGTLLAFTTVAFSVLILRYVPPDEVPIPSSLQKSIDPVRPSPSSLDTSIDPMSLHLGGGVEALLVILIRIAIGIHIMRQPPCLDIL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0711 495 CDD Ribosomal_L25_TL5_CTC 52 158 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele05g0711 495 Gene3D Ribosomal Protein L25; Chain P 52 159 IPR020056 -
Lele05g0711 495 SUPERFAMILY Ribosomal protein L25-like 52 230 IPR011035 GO:0006412
Lele05g0711 495 Gene3D Amino acid/polyamine transporter I 355 450 - -
Lele05g0711 495 Gene3D Ribosomal protein L25, beta domain 163 235 IPR037121 -
Lele05g0711 495 Pfam Ribosomal protein TL5, C-terminal domain 165 228 IPR020057 -
Lele05g0711 495 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 27 232 - -
Lele05g0711 495 Pfam Ribosomal L25p family 55 156 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele05g0711 495 Pfam Amino acid permease 355 433 IPR002293 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0711 Lele-ChrLele05 4186785 4194880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g0711 350 445 Organic Solute Cotransporters AT3G03720 69.792 1.64e-33 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0711 05 4186785 4194880 Lele05g0711 05 4186785 4194880 ECH
Lele05g0711 05 4186785 4194880 Lele07g0753 07 4268030 4268388 hybridization
Lele05g0711 05 4186785 4194880 Lele08g0550 08 3329892 3335183 hybridization