Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0707 ATGGGGCATGGCTTATATACTAAGGAAATGGACGATGCTTATGCGTGGTCGGTGAATGTGAAGGACGAGGCGTCTGAGCTTTGTGGGAAAAAGGAGAAAAAGGGAAGTCTTCTGGAATCTGGAAAAGAGGTAGAACTAGATTCAATTTCATCCTTGGTTGTTAAAATCGCCGCAGAGGACAGTAAAAGGACCGTGCCAATGGCAAAAGTGCCGTTTCATATACCAACTATTACGAAGCCTCAAGATGAGTATAACATGGTAGTTAATAATTCAAACCAACCTTTTGATCATGTCTGGTTGCAAAGGAGTGATGAAGGTCAGAAGTTTATTCATCCACTGGAGAACCTCTCTGCATTGGATTTTGTTGATAAACATTGTGGGGATATTGAGCCAATAAGGCCTCCCTCGATTGATTGTACCCCTTTCAAGAGAGTGACGGATGTCAAGGATTTGAAGGAGTTGGCTGCCAAGCTGCGCGCTGCTAAAGAATTTGCGGTGGATCTAGAACATAATCAATATCGGTCTTTTCAAGGATTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTGTGATAGACACTCTGAAGCTGCGTATTCATGTTGGGCCTTATCTAAGGGAAGTTTTCAAAGATCCTGCGAAGAGAAAGGTTATGCACGGAGCAGATCGAGATGTACTGTGGCTTCAAAGGGATTTTAGCATTTACATTTGTAATTTATTTGACACTTGCCAGCATGACTATTCCTTTTCAGTCTCGCGTACATTCTTTAATATTGACTAATATGCCAGAGAAGATACCCACTATCTGCTGTATATATATGATTTAATGAGGGTGAAGTTATTTGGATTGTCCAAAGACCCTCAATGTTCTGATAATCCTCTGCTGGAGGTTAGTCTAGAAAGGTTGCAAGGGACTGGTTTTAATGCTCAGCAATTGGCTATTGTTTCGTTGCCCACTGCTATTTTTAATCATACTATGCTCAACGCATGGCTTCAGGGGCTTTATGAATGGCGGGATATTGTTGCTCGCGCAGAGGATGAGAGCACTGGCTATGTGTTGCCAAATAAAACTCTTTTGGAAATTGCTAAGCAGATGCCTGTCACAAGAGAGAGACTACACAAATTGACAAAGTCAAAGCACCCGTATGTTGAGCGCAACTACGATAGCATTGTCAGCATCATCATACATTCTCTGCAAAATGCTCCTGCCTTTGAAGCAATTTCACAACAATTGAAAGAGAGACGTGTCACAAATGCAAGAAAAGAAAGTATTGGAGTTGAAAGTGCCAAATCACCTTTTCCTTTTTCCCTGAAAATGGATACTCTTCAGCATCAAAATAAACATGGACAGCTTAAATTTGGATCAAATAGTCCTACTTCAGAATTCTCTCACGGCAGTCTCAATATTTCACAACAGAACAGGGTAGCTATTTCTATGATGTGGGATAAAAAATTTTGTTGTTGTTGCTGCTGTGTAAAGGAAGAGGTCAAGCTAGAGCAGATTAGATTCTCTGCCAATCTTCCTCCTCGTCCATTTTTTGGTAGCATTGAGATCACAAATCAGCTCAGGGAGAGAAGTTCTGCGTCCAATATTTCAGATAAAGAGGAAGAAGTTGAGCCAATGTCTCTCTCAGGATTATCATTAAACTTCAAAGGATGA 1665 0.4096 MGHGLYTKEMDDAYAWSVNVKDEASELCGKKEKKGSLLESGKEVELDSISSLVVKIAAEDSKRTVPMAKVPFHIPTITKPQDEYNMVVNNSNQPFDHVWLQRSDEGQKFIHPLENLSALDFVDKHCGDIEPIRPPSIDCTPFKRVTDVKDLKELAAKLRAAKEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVIDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDVLWLQRDFSIYICNLFDTCQHDYSFSVSRTFFNIDXYAREDTHYLLYIYDLMRVKLFGLSKDPQCSDNPLLEVSLERLQGTGFNAQQLAIVSLPTAIFNHTMLNAWLQGLYEWRDIVARAEDESTGYVLPNKTLLEIAKQMPVTRERLHKLTKSKHPYVERNYDSIVSIIIHSLQNAPAFEAISQQLKERRVTNARKESIGVESAKSPFPFSLKMDTLQHQNKHGQLKFGSNSPTSEFSHGSLNISQQNRVAISMMWDKKFCCCCCCVKEEVKLEQIRFSANLPPRPFFGSIEITNQLRERSSASNISDKEEEVEPMSLSGLSLNFKG 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0707 554 SMART 35exoneu6 142 283 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lele05g0707 554 Coils Coil 151 171 - -
Lele05g0707 554 SMART hrdc7 326 405 IPR002121 GO:0003676
Lele05g0707 554 SUPERFAMILY Ribonuclease H-like 77 285 IPR012337 -
Lele05g0707 554 FunFam Putative exosome component 10 313 408 - -
Lele05g0707 554 Pfam 3'-5' exonuclease 145 248 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lele05g0707 554 Gene3D HRDC domain 321 405 IPR044876 -
Lele05g0707 554 ProSiteProfiles HRDC domain profile. 326 406 IPR002121 GO:0003676
Lele05g0707 554 SUPERFAMILY HRDC-like 330 401 IPR010997 GO:0000166|GO:0044237
Lele05g0707 554 Pfam HRDC domain 333 396 IPR002121 GO:0003676
Lele05g0707 554 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 9 246 IPR045092 GO:0000175|GO:0000467
Lele05g0707 554 Gene3D - 70 307 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0707 Lele-ChrLele05 4164561 4168728 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0707 05 4164561 4168728 Lele05g0707 05 4164561 4168728 ECH
Lele05g0707 05 4164561 4168728 Lele07g0748 07 4229187 4233545 hybridization