Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0225 ATGCCAAACAACTGTGAAGCAAACTTTTTGGGAGGTGTTGCCTATGTCAAGGGAGTTAAAGAATTTGACCCTGAAGCAGCAAAATGGAGATTCTTTGAAATGTCTTTGGATAAGTATGCAAAACCAGAGTCTGGAATTGGATTCCCAGGTGCCCGTGAACTAATTTCTCAGTGCAAAGGAAAAGGCCTTAAAGTTGTTGTTGCATCAAGTGCTGACCGTATAAAGGTTGATGCAAATTTAGTTGCTGCTGCTTTACCATTGTTTGATGCTATTGTGTGTGTAGATGCTTTTGAGAATTTGAAACCTGCTCCTGACATTTTTTTGGCTGCATCAAGGATATTGAATGTACCCCCTAGTGAGATAAGAGGATGCAGGGGCCTCAATCTTTTGATAATTGAAACTTCATCTGCAATGCTTGCTGGAAATTCAGATGACAGACTTGGCAAGATTACAAGTGGTGCCAATGGGGAGATTTTCCATACTAAATGTCTTGCTTTCTTCATTGATTATTCAATCACAATTCTTATTGTTGATTCACTTGGCTCTGAAATACTTCTTCAACATCCACTGGCAGTTTTGTGTGCAAAAGATGGGCAAATTTACATCACAGACAGCTACAATCATAAGATCAAAAAGTTAGATCCAGCTAGTAAAAGAGTTAGCACAATCGCAGGAACAGGGAAAGCTGGTTTTAGGGATGGAACAGCTGTAGCAGCTCAGTTCTCCGAACCATCTGGAATTGTTGAAGGGAATAATGAGTCAGTCCACTAGTGTTTTCCAGCAGATGAAATTTACAGATCTGAGGAAAGTCGAATGTATATGCTTTCGTTTTTTTACTCTTACAACATATGCATATTGACTTTTTGGTACATCTTGCTCACGGAAAAAAATAGGGAGACTATTCATAGCTGA 912 0.3925 MPNNCEANFLGGVAYVKGVKEFDPEAAKWRFFEMSLDKYAKPESGIGFPGARELISQCKGKGLKVVVASSADRIKVDANLVAAALPLFDAIVCVDAFENLKPAPDIFLAASRILNVPPSEIRGCRGLNLLIIETSSAMLAGNSDDRLGKITSGANGEIFHTKCLAFFIDYSITILIVDSLGSEILLQHPLAVLCAKDGQIYITDSYNHKIKKLDPASKRVSTIAGTGKAGFRDGTAVAAQFSEPSGIVEGNNESVHXCFPADEIYRSEESRMYMLSFFYSYNICILTFWYILLTEKNRETIHS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0225 303 ProSiteProfiles NHL repeat profile. 176 216 IPR001258 GO:0005515
Lele05g0225 303 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 178 252 - -
Lele05g0225 303 Gene3D - 145 255 IPR011042 -
Lele05g0225 303 SUPERFAMILY HAD-like 26 121 IPR036412 -
Lele05g0225 303 Gene3D - 34 122 IPR023214 -
Lele05g0225 303 CDD HAD_BPGM-like 29 120 - -
Lele05g0225 303 SUPERFAMILY Calcium-dependent phosphotriesterase 174 254 - -
Lele05g0225 303 Pfam Haloacid dehalogenase-like hydrolase 46 120 IPR041492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0225 Lele-ChrLele05 1256159 1261498 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0225 05 1256159 1261498 Lele05g0225 05 1256159 1261498 ECH
Lele05g0225 05 1256159 1261498 Lele07g0232 07 1276788 1280649 hybridization
Lele05g0225 05 1256159 1261498 Lele08g0037 08 226597 256749 hybridization