Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1653 ATGCCTCGGTTGAAATTGTTCCAACCAACCAGAAGTCGGGTTAATTTTGGCCGGCCGCGGTCCAAAAACCGAACTCCCTGGCTGTTCCCTTCTTCACAATCGCAATCGCAGTCAAGCAGAATTGAAGGGGCTCGAACCGGAAGTGTCCTAACAATAGAAGCTAAGAACAGGCGTTTTTCTGCCGTTTTCGAGCGATTTGTGGATACAGATTACAGAAGAATGCTTCCGCAGCGGGTGAAGAAGACTATCGCTGAAAATCCAAAGAAACTAGCCAACTTGATTGACCTTGTAAATCTTCCCTCGACAGTTCGAGAGTTTGTGGGTCAATCTCAAACTTCTCGGTTAGGCTGTTTTATGCGGGTTTGGTCCTACATCAAAACCAATAATCTCCAGGATGCAAACAATAAGAATGTGGTGAACTGTGATGAAAAGCTGAAAAGCATTCTGTCGGGGAGATCTCAGGTTGAGTTGGCAGAACTTCCTGAACTAATCAAGCTCCATTTTCCAAAAGCACCCAAGTAA 522 0.454 MPRLKLFQPTRSRVNFGRPRSKNRTPWLFPSSQSQSQSSRIEGARTGSVLTIEAKNRRFSAVFERFVDTDYRRMLPQRVKKTIAENPKKLANLIDLVNLPSTVREFVGQSQTSRLGCFMRVWSYIKTNNLQDANNKNVVNCDEKLKSILSGRSQVELAELPELIKLHFPKAPK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1653 173 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 50 173 - -
Lele04g1653 173 SMART swib_2 93 173 IPR019835 -
Lele04g1653 173 CDD SWIB-MDM2_like 104 168 - -
Lele04g1653 173 Gene3D SWIB/MDM2 domain 89 173 IPR036885 -
Lele04g1653 173 MobiDBLite consensus disorder prediction 25 42 - -
Lele04g1653 173 MobiDBLite consensus disorder prediction 9 42 - -
Lele04g1653 173 SUPERFAMILY SWIB/MDM2 domain 89 171 IPR036885 -
Lele04g1653 173 ProSiteProfiles SWIB/MDM2 domain profile. 92 170 IPR003121 -
Lele04g1653 173 Pfam SWIB/MDM2 domain 97 168 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1653 Lele-ChrLele04 21309921 21311440 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele04g1653 SWIB 5.2e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1653 04 21309921 21311440 Lele04g1653 04 21309921 21311440 ECH
Lele02g1667 02 20378996 20380272 Lele04g1653 04 21309921 21311440 hybridization