Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1667 ATGCTGGATACTTCGCTTCCTTCTTGTTGCTTTGCATGTTTCGAGCGATTTGTGGATACATATTACAGAAGAATGCTTCCGCAGCGTGTGAAGAAGACTATCGCTGAAAATCCAAAGAAACTAGCCAACTTGATTGACCTTGTAAATCTTCCCTCGACAGTTCGAGAGTTTGTGGGTCAATCTCAAACTTCTCGTTTAGGCTGTTTTATGCGGGTTTGGTCCTACATCAAAACCAATAATCTCCAGGATGCAAACAATAAGAATGTGGTGAAATGTGATGAAAAGCTGAAAAGCATTCTGTCGGGGAGATCTCAGGTTGAGTTGGCAGAACTTCCTGAACTAATCAAGCTCCATTTTCCAAAAGCCCCCAAGTAA 375 0.4213 MLDTSLPSCCFACFERFVDTYYRRMLPQRVKKTIAENPKKLANLIDLVNLPSTVREFVGQSQTSRLGCFMRVWSYIKTNNLQDANNKNVVKCDEKLKSILSGRSQVELAELPELIKLHFPKAPK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1667 124 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 32 124 - -
Lele02g1667 124 Pfam SWIB/MDM2 domain 48 119 IPR003121 -
Lele02g1667 124 SUPERFAMILY SWIB/MDM2 domain 40 122 IPR036885 -
Lele02g1667 124 CDD SWIB-MDM2_like 55 119 - -
Lele02g1667 124 SMART swib_2 44 124 IPR019835 -
Lele02g1667 124 Gene3D SWIB/MDM2 domain 39 124 IPR036885 -
Lele02g1667 124 ProSiteProfiles SWIB/MDM2 domain profile. 43 121 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1667 Lele-ChrLele02 20378996 20380272 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele02g1667 SWIB 5.2e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1667 02 20378996 20380272 Lele02g1667 02 20378996 20380272 ECH
Lele02g1667 02 20378996 20380272 Lele04g1653 04 21309921 21311440 hybridization