Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0677 ATGGCAACCCGAAGAAATTTAAGACTAACCAAACCCGCTTTTGCTGCCATAAGAGTGTCTAGGACAGCTCAAAAATCCCCCTATCACTCTCGCTCCGCACTAGGTCCCCGTGAACGTGTGTTATCTGGCCTCCCGTCTACTTCAGCGAAGTCAAATGCTCAGGATTTCTTGTCTCAGGCTCAGATCATAAATAGAGTAGCACAGAGCAATGCAGCCTCCGCCCAGTTTCTATCTTACTCTTTCCCTCGCCAGTTCCACTCTTCTAATCCCTCCTACAGCTCCGCGGGCACTACTCAGATTACTCCAACAGAGTTCACGGAGCTGGCATGGGAGGGTATTATTGGTGCCATCGATGCAGCACGAGCTAGCAAACAACAAGTTGTGGAGTCCGAGCATTTAATGAAAGCCTTATTGGAGCAAAAAGATGGTCTAGCCCGACGAATATTTACCAAGGCAGAACTGGACAACACATCAGTTTTGCAGGCTACAGATGACTTCATATCTCAGCAACCCAAGGTAACTGGTGACACAAATGGGCCTGTGATGGGTTCATGCCTTGTTTCTCTCTTGGACAATGCACGAAAGCACAAGAAAGAAATGAAGGATGAATATGTTTCTGTGGAGCATTTTTTGCTGGCATTTCTATTGGATAAGAGGTTTGGGAAACAGTTATTCAAGAACCTTAACATTAGTGAGAAAGTTTTGAAAGATGCTATCCAGGCTGTTCGTGGAAGTCAAAGAGTGACCGACCAAAATCCTGAGGGAAAATATGAGGCGCTAGACAAATTTGGAAATGATTTGACTGAACTTGCTAGACGTGGTAAACTTGATCCAGTCATAGGTCGAGATGATGAAATTCGGCGTTGTATTCAGATATTGTCAAGAAGAACAAAAAATAATCCTGTAATCATTGGTGAACCTGGTGTTGGAAAAACTGCAATTGCTGAAGGATTAGCTCAAAGGATAGTGCGTGGAGATGTTCCTGAACCATTGTTGAATCGAAAGTTGATCTCCCTCGATATGGGTTCATTGGTTGCTGGTGCCAAGTTTCGTGGAGACTTTGAGGAAAGGTTGAAAGCTGTTCTGAAGGAAGTTACGGCTTCAAATGGGCAGATAATTTTATTTATTGATGAGATTCATACTGTTGTTGGTGCAGGGGCTACAACTGGTGCAATGGATGCTGGGAACTTATTGAAGCCGATGCTTGGACGAGGTGAACTTCGATGTATTGGAGCAACTACACTGAACGAATATAGAAAGTATATTGAGAAAGATCCTGCACTGGAGCGCAGGTTTCAACAAGTGTTTTGTGGCCAACCCTCTGTTGGAGACACCATATCCATTCTTCGTGGATTACGTGAACGCTATGAGTTGCATCATGGAGTAAAAATATCAGATAGCGCACTTGTTTCAGCAGCAATTCTTGCAGATCGATATATAACAGAACGTTTTTTGCCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCAAAGCTGAAGATGGAGATTACTTCAAAGCCAATTGAGTTGGATGAAATAGATAGAGCTATCCTTAAGTTGGAGATGGAAAAGCTGTCTCTAAAAAATGACACTGATAAAGCATCCAGAGAAAGATTGGGTAAACTTGAAAATGATTTGAGTTCACTTAAACAGAAGCAAAGAGAATTAGCAGAACAATGGGACCGTGAAAAGGCCTTGATGAATAGGATAAGATCAATTAAAGAAGAGATTGATAGAGTTAACCTTGAGATGGACGCTGCTTGGCGTGAGCAAGACCTTAATCGAGCTGCAGAGCTTAAGTATGGAACTCTAGTAACCCTTCAACGGCAATTAGAGCAAGCTGAAAAGAACCTAGCCGAATTTCAAAATTCTGGACAATCCTTACTTCGAGAAGAGGTCACTGATCTTGACATTGCAGAGATCGTAAGCAAATGGACTGGCATACCATTATCAAACCTCCAACAAACAGAGAGAGAGAAGTTGGTCTCGCTGGAAGAAGTTCTTCATAAGAGGGTAGTTGGGCAGGATATTGCTGTAAAATCTGTGGCTGATGCCATCAGACGTTCAAGGGCAGGCTTGTCCGACCCAAATCGTCCAATTGCAAGCTTCATGTTCATGGGCCCAACTGGTGTTGGCAAAACTGAGCTTGCAAAGGCTTTGGCTGGTTACCTGTTTAACACAGAAAATGCTCTTATTAGAATTGATATGAGCGAGTATATGGAGAAACATGCAGTTTCACGTTTGGTTGGGGCACCCCCTGGTTATGTTGGTTATGAAGAAGGCGGACAGCTAACTGAAGTTGTTCGTAGAAGACCTTACTCGGTGGTGCTTTTTGATGAAATAGAGAAGGCTCATCATGACGTCTTCAACATTTTGTTGCAATTGTTGGATGATGGAAGGATTACTGATTCACAAGGAAGGACTGTTAGCTTCACAAATTGTGTTGTGATAATGACTTCAAACATTGGATCTCATTATATACTTGAAACTCTTCGGAATACACAGGGTGACAGAAATGCCTTCTATGATCAAATGAAAAGACAAGTAATTGAGTTGGCACGGCAAACATTCCGTCCCGAGTTCATGAATCGTATTGATGAATATATTGTTTTCCAGCCTTTGGATTCCAAGCAGATCAGCAAAATAGTTGAGCTTCAGATGGAACGGGTCAAGGAAAGGCTCAAGCAAAAGAAAATAGACCTTCATTACACAAAAGAAGCTGCAGAACTTGTGAGTGTATTGGGTTTTGATCCAAATTTTGGGGCAAGACCAGTCAAAAGAGTTATACAGCAATTGGTTGAGAATGAAATTGCAATGGGAGTACTAAGGGGAGATTTTAAAGAAGAGGACTCCATTGTTGTCGATGCTGACGTCACTCCAACCATTAGGGACCTTCCACCCCAAAAGAAACTGCTTATCAAGAAATTGGAGAACTCTGCTGCGGATGCTATGGTTGCAAATGATTAG 2970 0.4259 MATRRNLRLTKPAFAAIRVSRTAQKSPYHSRSALGPRERVLSGLPSTSAKSNAQDFLSQAQIINRVAQSNAASAQFLSYSFPRQFHSSNPSYSSAGTTQITPTEFTELAWEGIIGAIDAARASKQQVVESEHLMKALLEQKDGLARRIFTKAELDNTSVLQATDDFISQQPKVTGDTNGPVMGSCLVSLLDNARKHKKEMKDEYVSVEHFLLAFLLDKRFGKQLFKNLNISEKVLKDAIQAVRGSQRVTDQNPEGKYEALDKFGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLLNRKLISLDMGSLVAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATTGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCGQPSVGDTISILRGLRERYELHHGVKISDSALVSAAILADRYITERFLPDKAIDLVDEAAAKLKMEITSKPIELDEIDRAILKLEMEKLSLKNDTDKASRERLGKLENDLSSLKQKQRELAEQWDREKALMNRIRSIKEEIDRVNLEMDAAWREQDLNRAAELKYGTLVTLQRQLEQAEKNLAEFQNSGQSLLREEVTDLDIAEIVSKWTGIPLSNLQQTEREKLVSLEEVLHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALIRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLRNTQGDRNAFYDQMKRQVIELARQTFRPEFMNRIDEYIVFQPLDSKQISKIVELQMERVKERLKQKKIDLHYTKEAAELVSVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIVVDADVTPTIRDLPPQKKLLIKKLENSAADAMVAND 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0677 989 Pfam AAA lid domain 442 543 IPR041546 -
Lele04g0677 989 SMART ClpB_D2_small_2 875 963 IPR019489 -
Lele04g0677 989 Coils Coil 564 584 - -
Lele04g0677 989 Gene3D - 101 247 IPR036628 -
Lele04g0677 989 Coils Coil 511 560 - -
Lele04g0677 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 648 IPR027417 -
Lele04g0677 989 FunFam Chaperone clpB 1, putative 248 441 - -
Lele04g0677 989 Gene3D - 875 965 - -
Lele04g0677 989 FunFam ATP-dependent chaperone ClpB 442 647 - -
Lele04g0677 989 FunFam ATP-dependent Clp protease subunit 653 873 - -
Lele04g0677 989 SMART AAA_5 297 441 IPR003593 -
Lele04g0677 989 SMART AAA_5 700 857 IPR003593 -
Lele04g0677 989 Coils Coil 605 632 - -
Lele04g0677 989 Pfam ATPase family associated with various cellular activities (AAA) 303 435 IPR003959 GO:0005524|GO:0016887
Lele04g0677 989 Gene3D - 248 441 IPR027417 -
Lele04g0677 989 FunFam ATP-dependent chaperone ClpB 875 963 - -
Lele04g0677 989 Gene3D - 652 873 IPR027417 -
Lele04g0677 989 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 105 958 IPR017730 GO:0005737|GO:0009408|GO:0042026
Lele04g0677 989 Pfam Clp amino terminal domain, pathogenicity island component 193 244 IPR004176 -
Lele04g0677 989 Pfam Clp amino terminal domain, pathogenicity island component 118 167 IPR004176 -
Lele04g0677 989 ProSitePatterns Chaperonins clpA/B signature 1. 393 405 IPR018368 GO:0005524
Lele04g0677 989 Gene3D - 442 647 IPR027417 -
Lele04g0677 989 SUPERFAMILY Double Clp-N motif 104 255 IPR036628 -
Lele04g0677 989 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 778 796 IPR001270 GO:0005524
Lele04g0677 989 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 704 722 IPR001270 GO:0005524
Lele04g0677 989 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 811 825 IPR001270 GO:0005524
Lele04g0677 989 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 749 767 IPR001270 GO:0005524
Lele04g0677 989 ProSiteProfiles Clp repeat (R) domain profile. 102 245 IPR004176 -
Lele04g0677 989 PANTHER ATP-DEPENDENT CLP PROTEASE 106 980 - -
Lele04g0677 989 Pfam AAA domain (Cdc48 subfamily) 699 868 IPR003959 GO:0005524|GO:0016887
Lele04g0677 989 CDD AAA 674 822 - -
Lele04g0677 989 CDD AAA 280 440 - -
Lele04g0677 989 ProSitePatterns Chaperonins clpA/B signature 2. 734 752 IPR028299 -
Lele04g0677 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 955 IPR027417 -
Lele04g0677 989 Pfam C-terminal, D2-small domain, of ClpB protein 875 955 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0677 Lele-ChrLele04 4112314 4118117 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0677 01 3954950 3959978 Lele04g0677 04 4112314 4118117 hybridization
Lele02g0661 02 3972813 3978597 Lele04g0677 04 4112314 4118117 hybridization