Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0677 ATGCTCAAAATTTCTTGTCGCAGGCTCAGATCATCAATAGAGTTGGACAGAGTAATGCAGCCTCTGCTCAGTCTCTATCTTACTCTTTCACTCGCCACTTCCACCCATCTAACCCCTCGTACCGCTCCGATGGCACTACTCAGACTTAAAGGGTTTGGAAGGAAAAATGAAGCTAAGCATAGGCGTGTGGTTTTGCTCATTTTGCAAGTTAACGTGCTCTCTATCTTTTGTTCAGATTACTCCAACAGAGTTCACGGAGCTGGCATGGGAGGGTATTATTATGGTCTAGCCCGACGAATATTTACCAAGGCAGAACTGGACAACACCTCAGTTTTGCAGGCTACAGATGACTTCATATCTCAGCTACCGAAGGTAACAGGTGACACGAGTGGACCTGTGATGGGTTCACACCTTGTTTCTCTCTTGTACAATGCACGAAAGCACAAGAAAGAAATGAGGGATGAATATGTTTCTGTTGAGCATTTTTTGCTGGCGTTTCTATCAGATAAGAGGTTTGGGCAACAGCTATTCAAGAACCTTAACATCAGTGAGAAAATTTTGAAAGATGGTATCCGGGCTGTTCGTGGAAGTCAAAGAGTGACTGATCAAAGTAGCCTCTTTATTTCTGTTTGTCAACTTTATGCAGATCCCGAGGGCAAATATGAGCCGCTAGACAAATATGGAAATGACTTAACTGAACTTGCTAGGCGTGGCAAACTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGCGTTGTATTCAAACATTGTCAAGAAGAACAAAAAATAATCCTGTAATTATTTGTGAACCTGGTGTTGGGAAAACTGCAATTGCGGAAGGATTAGCTCAAAAGATAGTGCGTGGTGATGTTACTGAACCATTGTTGAATCGAAAGATCACATCATTGCTTGTTTTCCTTGCACTTGTTTCAGCGGCGATTCTTGCAGATCGATATATAACAGAACGTTTTCTGCCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCCGCAAAGCTAAAGATGGATATTGCTTCGAAGCCAATTGAGTTGGATGAAATAGATAGAGCTATCCTTAAGTTGGAGATGGAAAAACTGTCTCTGAAAAATGACACTGATAAAGCATCCAAAGAAAGATTGAAGCTTAAGTATGGAACTCTGGTAACTCTTCAGCGCCAATTAGAGCAAGCTGAAAATAAACTAGCCGACTTTCAAAATTCTAGGCAATCCTTGCTGCGAGAAGAGGTCACTGATCTTGACATTGCAGAGATTGGTGACAGAAATGCCTTTTACGATCAAATGAAAAGACAAGTAATTGAGTTGGCTCGGCAAACATTCCGTCCTGAGTTCATGAATCGTACTGATGAATATATTGTTTTCCAGCCTTTGGATTCCAAGCAGATCAGCAAAATAGTTGAGCTTCAGATGGAACGCGTCAAGGAAAGGCTCAAGCAAAAGAAAATAGATCTTCATTACACAAAAGAAGCCATCGAACTTCTGAGTGTATTTGCTTTTGATCCAAATTTTTGGGCAAGACCAGTCAAAAGAGTTATACAGCAATTGGTTGTGAATGAAATTGCAATGGGAGTACTAAGGGGAGATTTTAAAGAAGACTCAATTGTTGTCGATGCTGATGTGACTCCAGCTGCCAAGGACCTTCCACCCCAAAAGAAACTGCTTGTCAAGAAATTGGAGAACCCTGCTGCAGATGCGATGGTTGCAAATGATTAG 1731 0.4159 MLKISCRRLRSSIELDRVMQPLLSLYLTLSLATSTHLTPRTAPMALLRLKGFGRKNEAKHRRVVLLILQVNVLSIFCSDYSNRVHGAGMGGYYYGLARRIFTKAELDNTSVLQATDDFISQLPKVTGDTSGPVMGSHLVSLLYNARKHKKEMRDEYVSVEHFLLAFLSDKRFGQQLFKNLNISEKILKDGIRAVRGSQRVTDQSSLFISVCQLYADPEGKYEPLDKYGNDLTELARRGKLDPVIGRDDEIRRCIQTLSRRTKNNPVIICEPGVGKTAIAEGLAQKIVRGDVTEPLLNRKITSLLVFLALVSAAILADRYITERFLPDKAIDLVDEAAAKLKMDIASKPIELDEIDRAILKLEMEKLSLKNDTDKASKERLKLKYGTLVTLQRQLEQAENKLADFQNSRQSLLREEVTDLDIAEIGDRNAFYDQMKRQVIELARQTFRPEFMNRTDEYIVFQPLDSKQISKIVELQMERVKERLKQKKIDLHYTKEAIELLSVFAFDPNFWARPVKRVIQQLVVNEIAMGVLRGDFKEDSIVVDADVTPAAKDLPPQKKLLVKKLENPAADAMVAND 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0677 576 PANTHER ATP-DEPENDENT CLP PROTEASE 308 424 - -
Lele01g0677 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 538 IPR027417 -
Lele01g0677 576 CDD AAA 244 292 - -
Lele01g0677 576 SUPERFAMILY Double Clp-N motif 95 204 IPR036628 -
Lele01g0677 576 Pfam C-terminal, D2-small domain, of ClpB protein 463 540 IPR019489 -
Lele01g0677 576 Pfam AAA lid domain 308 381 IPR041546 -
Lele01g0677 576 Gene3D - 463 552 - -
Lele01g0677 576 SMART ClpB_D2_small_2 463 548 IPR019489 -
Lele01g0677 576 Coils Coil 380 414 - -
Lele01g0677 576 Gene3D - 44 201 IPR036628 -
Lele01g0677 576 Pfam Clp amino terminal domain, pathogenicity island component 145 196 IPR004176 -
Lele01g0677 576 Coils Coil 351 371 - -
Lele01g0677 576 ProSiteProfiles Clp repeat (R) domain profile. 95 197 IPR004176 -
Lele01g0677 576 Gene3D - 214 383 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0677 Lele-ChrLele01 3954950 3959978 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0677 01 3954950 3959978 Lele03g0672 03 3960639 3965906 hybridization
Lele01g0677 01 3954950 3959978 Lele04g0677 04 4112314 4118117 hybridization