Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0234 ATGGGGCTGATATCGGCGGTACGGGATTATATCAGCCGGATGTTGCAAGATATCTCTGGCATGAAGGTAAGTATTGTCAGTGTTGTCTATTCGCAGTCAGAGCTTCTTCAGAAAGAAGTCTTTTTAGTAGAGTTGGTGGATTCCATTTCGAAGTCGAAGGAACCTATGTCACATCTCAAGGCTGTTTGCTTCCTTCGACCAACTTCAGAGAACATCCAGCATTTGCGCCGCCAGATAGCCAATCCTAGATTTGGAGAATATCATCTTTGTAGTATGTTGAAGGACACTCAGATTCACATACTTGCTGATTCAGATGAACAGGAAGTTGTCCAGCAAGTTCAGGAGTTTTATGCAGACTTTGTTGCACTTGATCCTTACCATTTTACCTTAAATATGCCTTCAAATTACATTTATATGCTCCCAGCAGTGGTGGATCCTTTAACATTGCAGCGCTTCTGTGAACGGGCTGTTGACAGTATTGCAGCTGTTTTTTTGGCGTTAAAGCGAAGACCCGTTATTAGATACCAAAGGACATCTGACGTTGCAAAAAAGATAGCACAGGAAGCAACAGAAAGTGGTCTTTTTGATTTTAGGCGAACAGAAGTTTCTCCATTATTATTGGTGATTGACCGGAGGGATGATCCTGTAACCCCATTGTTAAATCAATGGACCTATCAGGCAATGGTTCATGAACTAATAGGAATCCAAGATAACAAAGTAGACTTTAAATCCCTTGGTAAATTTCCAAAGGATCAGGAGGAAGTCGTGCTGTCATCAGAACAAGATATTTTCTTCAAAGCCAACATGTATGAGAATTTTGGAGATATAGGTATGAATATCAAGCGCTTGGTGGATGAATTTCAGCAAGTGGCAAAGAGTAACCAGAACATCCAGACAATAGAGGACATGGCCAAATTCGTTGACAATTACCCTGAGTACAGAAAAATGCATGGAAATGTGTCCAAACATGTAACCTTGGTAACAGAAATGAGCAAGATAGTTCAAGAGAGAAAACTTATGTTAGTTTCAGAAGTAGAACAGGAGTTGGCTTGTAATGGAGGGCAAGGGGCTGCTTTTGAGGCAGTGACAAATCTACTAAACAATGAAAGTATATCAGATGAGGACCGGCTACGTTTAGTCATGTTGTATGCTTTGCGATATGAGAAGGATAGCCCTATTGTCCAGTTTCTTTTGAAGCAAGCAGGTGTTGACAAGAGAACTGGTGATCTTTATGGAAGTAGAGATCTACTGAATATTGCTCGTAACATGGCTCGTGGATTGAAGACCATGGAAAGCATTGTGAAAGGACGATTGAGGGATGTGGACTACCCAATTGTTGGAAATCACTTTCAGCAGGGAAGGCCACAGGAAGTTATCATCTTCATTGTTGGTGGGACGACTTATGAGGAGTCACGATGTATTGCAATACAAAATAACAATAATACTGGGATTCGTTTCATACTTTGTGGTACGGCGGTTCTTAATTCTAAGGGTTCTGGGTTCTGGCTTGGTTGTGTCGACCTGGTTGGGAACTTGGGATTTGGTGGTTTTTCTGTTGAGATTGATGTGCTTGGTGTATTTGGTTTATTAGGGACTTGGAAGAAGCTCAGAGGGTAG 1617 0.415 MGLISAVRDYISRMLQDISGMKVSIVSVVYSQSELLQKEVFLVELVDSISKSKEPMSHLKAVCFLRPTSENIQHLRRQIANPRFGEYHLCSMLKDTQIHILADSDEQEVVQQVQEFYADFVALDPYHFTLNMPSNYIYMLPAVVDPLTLQRFCERAVDSIAAVFLALKRRPVIRYQRTSDVAKKIAQEATESGLFDFRRTEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDFKSLGKFPKDQEEVVLSSEQDIFFKANMYENFGDIGMNIKRLVDEFQQVAKSNQNIQTIEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVQERKLMLVSEVEQELACNGGQGAAFEAVTNLLNNESISDEDRLRLVMLYALRYEKDSPIVQFLLKQAGVDKRTGDLYGSRDLLNIARNMARGLKTMESIVKGRLRDVDYPIVGNHFQQGRPQEVIIFIVGGTTYEESRCIAIQNNNNTGIRFILCGTAVLNSKGSGFWLGCVDLVGNLGFGGFSVEIDVLGVFGLLGTWKKLRG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0234 538 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 222 335 IPR043127 -
Lele04g0234 538 Gene3D - 12 118 IPR043154 -
Lele04g0234 538 Gene3D - 128 497 IPR027482 -
Lele04g0234 538 Gene3D - 337 427 - -
Lele04g0234 538 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 23 496 IPR001619 GO:0016192
Lele04g0234 538 PIRSF VPS45_Sec1 7 406 IPR001619 GO:0016192
Lele04g0234 538 PIRSF VPS45_Sec1 425 498 IPR001619 GO:0016192
Lele04g0234 538 Pfam Sec1 family 24 497 IPR001619 GO:0016192
Lele04g0234 538 SUPERFAMILY Sec1/munc18-like (SM) proteins 1 497 IPR036045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0234 Lele-ChrLele04 1386000 1391052 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0234 04 1386000 1391052 Lele04g0234 04 1386000 1391052 ECH
Lele01g0233 01 1336546 1341451 Lele04g0234 04 1386000 1391052 hybridization
Lele02g0228 02 1287216 1292655 Lele04g0234 04 1386000 1391052 hybridization