Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0185 ATGGAGAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGAATATGACTCAGAGACCTTGGCTAGGATCAGGCCTCGGTATAATCACCACTACGCAAGTAGTACCCACCGTCATCGCGGTGGCGGCAGTGGTGCTCGACCTAAGGCGCAAGACTCAGCTTTAACGGTGGCCACAAGTTACCGCATTTTGTGCCACGATATCAAGGCTGGTGGAGTAATTGGCAAGTCAGGTAGCATTATAAAGTCTATTAGACAACACACCGGCGCGTGGATCAACGTGCACGAGCTGATCCCTGGCGATGAGGAGCGAATCATTGAGATTTCTGACACGCGCCGGCGAGACCCAGAAGGCCGGATGCCATCGTTCTCGCCAGCGCAGGAGGCCTTGTTGTTGATTCATGAGAGAATTCTTGAGAGCGATGCTGCGTTTGGGATTGGCGAAGAGGAGGAGGATTATGGGGGCAGAGGAGGCGGGAGCAGCAGCCGAGTCGCCACTAGACTGGTGGTGTCTAGAATGCACGTGGGGTGTTTGTTGGGCAAAGGAGGGAAGATTATTGAACAAATGAGAATCGAAACCAAGACACAGATTAGGATACTTCCTAGAGATCACAATCTACCTCGTTGTGTTTCCATGTCCGAAGAAATTGTTCAGGTTGTAGGTGATGCAAATGCTGTAAAGAATGCTATAGTACTTATATCATCACGCTTGAGGGAAAGCCAACATCGTGACCGCAGTCATTTCCACGGACGAGCACATTCACCAGAGCGTCTTTTCCCTCCAGATGATGATTATATGCCTCATGGGGCAGCTCGTAGATCCTCTATAGATGGGGCAACTTTTGGATCACGAATATCTACTGCCAATATAAGAAGCAATAGCTCTCCATCATTAGGTTATACAATGGAACCTGGGGCTCCACCTGTAGCTGATGATGCACAACCCCTTTATGGTGAAGACCTCATTTTCCGGATACTTTGTCCACTGGACAAAGTGGACCGTATTATAGGGGAATCAGAAGGATTTGTAGAGTTCCTTCAAACTGAAGTTGGTGTTGATGTTAAAGCAGATGATCATGTGGTTGGTTCAGATGAGCAGATAATCATAATTTCTTCAGATGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAGGAAGCTTTGTTGCATATCCAATCACGCATTGTTGATCTTGAGCTAGATGATGACAACATTATAACTACCAGGCTTGTTGTTCCATCTAGTGACATTGAATGTTTAGATGGAAGAGATGTAACACTATTAGAGATAAGTAGATTCACTGGCACAAATATTCAAATTCTCCCTAGAGAGCAGTTACCTCCCTGTGTTGCAAAAAATGATGAGCTGATACAGATTGTAGGTGGGATCAAAGCAGCTCGAGAAGCTATTCTTGAGGTGACATCAAGACTAAAAAATTATTTGTACAGTGATTTTCTTCAAAGGGACACAGCACCATCATCTACCTCAGTACCTAATACGGAGATATCTTCTTCCAGTAACATAGCTCCAGTTCATGAGGGTTACGCTGGCACTGAAACTCCCATAACCTATCAGAATGTGCAACCTGCGGCAGCTACACTTCCCTTAAAAGAAATTGGAGGATCTAGCACAGAGACAGGAAAGCAGAAAGAAGGTGATCACCGCGATGATATGATGAGTAGTTTGAATAGGATCCCTGTACCACTTGTCACTAGAAGTACACTTGAAGTGGTCTTACCGGAGTACGCAGTTCCAAAGCTTACGGCAAAGTCCAAAAACAAACTTGCTCAGATAAGTGAGTTGTCAGGAGCCACTGTAACACTTGTAGAGGATAGACCGGAGGAGACACAAAAGATTATTCGGATATCTGGTACTCCAGAGCAGGCAGAGAGAGCTCAGAGCTTGCTCCAAGGATTTATTTTGAGCACACAAGAAGATGGCCCCTAA 1944 0.4583 MERSRSKRNYYYDQEYDSETLARIRPRYNHHYASSTHRHRGGGSGARPKAQDSALTVATSYRILCHDIKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGIGEEEEDYGGRGGGSSSRVATRLVVSRMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDANAVKNAIVLISSRLRESQHRDRSHFHGRAHSPERLFPPDDDYMPHGAARRSSIDGATFGSRISTANIRSNSSPSLGYTMEPGAPPVADDAQPLYGEDLIFRILCPLDKVDRIIGESEGFVEFLQTEVGVDVKADDHVVGSDEQIIIISSDEGPDDELFPAQEALLHIQSRIVDLELDDDNIITTRLVVPSSDIECLDGRDVTLLEISRFTGTNIQILPREQLPPCVAKNDELIQIVGGIKAAREAILEVTSRLKNYLYSDFLQRDTAPSSTSVPNTEISSSSNIAPVHEGYAGTETPITYQNVQPAAATLPLKEIGGSSTETGKQKEGDHRDDMMSSLNRIPVPLVTRSTLEVVLPEYAVPKLTAKSKNKLAQISELSGATVTLVEDRPEETQKIIRISGTPEQAERAQSLLQGFILSTQEDGP 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0185 647 Gene3D K Homology domain, type 1 57 140 IPR036612 GO:0003723
Lele04g0185 647 ProSiteProfiles Type-1 KH domain profile. 163 233 - -
Lele04g0185 647 ProSiteProfiles Type-1 KH domain profile. 571 635 - -
Lele04g0185 647 Gene3D - 320 480 - -
Lele04g0185 647 CDD PCBP_like_KH 167 234 - -
Lele04g0185 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 376 IPR036612 GO:0003723
Lele04g0185 647 ProSiteProfiles Type-1 KH domain profile. 58 130 - -
Lele04g0185 647 MobiDBLite consensus disorder prediction 242 262 - -
Lele04g0185 647 MobiDBLite consensus disorder prediction 534 558 - -
Lele04g0185 647 Pfam KH domain 61 109 IPR004088 GO:0003723
Lele04g0185 647 Pfam KH domain 573 636 IPR004088 GO:0003723
Lele04g0185 647 Pfam KH domain 166 234 IPR004088 GO:0003723
Lele04g0185 647 CDD PCBP_like_KH 60 134 - -
Lele04g0185 647 CDD KH-I 573 636 - -
Lele04g0185 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 397 483 IPR036612 GO:0003723
Lele04g0185 647 Gene3D K Homology domain, type 1 160 242 IPR036612 GO:0003723
Lele04g0185 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 244 IPR036612 GO:0003723
Lele04g0185 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 59 109 IPR036612 GO:0003723
Lele04g0185 647 Gene3D K Homology domain, type 1 570 642 IPR036612 GO:0003723
Lele04g0185 647 SMART kh_6 319 392 IPR004087 GO:0003676
Lele04g0185 647 SMART kh_6 403 477 IPR004087 GO:0003676
Lele04g0185 647 SMART kh_6 57 138 IPR004087 GO:0003676
Lele04g0185 647 SMART kh_6 162 238 IPR004087 GO:0003676
Lele04g0185 647 SMART kh_6 570 640 IPR004087 GO:0003676
Lele04g0185 647 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 50 272 - -
Lele04g0185 647 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 572 643 IPR036612 GO:0003723
Lele04g0185 647 ProSiteProfiles Type-1 KH domain profile. 320 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0185 Lele-ChrLele04 1032216 1036960 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0192 03 1024912 1029480 Lele04g0185 04 1032216 1036960 ECH
Lele04g0185 04 1032216 1036960 Lele04g0185 04 1032216 1036960 ECH
Lele01g0188 01 1047585 1053367 Lele04g0185 04 1032216 1036960 hybridization
Lele02g0188 02 1021576 1026268 Lele04g0185 04 1032216 1036960 hybridization