Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0188 ATGGAGAGGTCTAGATCTAAGAGAAACTACTACTATGACCAAGAATATGACTCAGAGACCTTGGCTAGGACCAGACCTCGGTATAATCACCATTATGCAAGTAGTACCCACCGTCATCGTGGCGGCGGCAGTGGTGTTCGACCTAAGGCGCAAGACTCATCCTTAACGGTGACCACAAGTTACCGCATTCTGTGCCACGATATCAAGGCTGGCGGAGTAATTGGCAAGTCAGGTAGCATTATAAAGTCTATTAGACAACACACCGGCGCGTGGATCAACTTGCATGAGCTGATCCCTGGCGACGAGGAGAGAATCATTGAGATTTCTGACACGCGCCGGCGAGACCCAGAAGGCCGAATGCCATCGTTCTCGCCGGCGCAGGAGGCCTTGTTGTTGATTCATGAGAGAATTCTTGAGAGCGATGCTGCGTTTGGGATTGGCGAAGAGGAAGAGGATTATGGGGGCAGAGGAGGCGGGAGCAGCAGCCGAGTCGCCACTAGACTGGTGGTGTCCAGAATGCATGTGGGGTGCTTGTTGGGCAAAGGAGGGAAGATTATTGAACAAATGAGAATTGAAACCAAGACACAGATTAGGATACTTCCTAGAGATCACAATCTACCTCACTGTGTTTCCATGTCCGAAGAAATTGTTCAGGTTGTAGGTGATGCAAATGCTGTAAAGAATGCTATAGTACTTATATCATCACGCTTGAGGGAAAGCCAACATCGTGACCGCAGTCATTTTCATGGAAGAGCACATTCACCCGAGCGTTTTTTCCCTCCAGATGATGATTATATGCCTCAGGGGGCAGCTCGTAGATCCTCTATAGACGGGGCAACTTTTGGATCACGAATATCTACTGCCAATATGAGAAGCAATAGCTATCCGTCATTAGGTTATACAATGGAACCTGGGGCTCCACCTGTCGCTGATGATGCACAACCCCTTTATGGAGAAGACCTAATTTTCCGGATACTGTGTCCACTGGACAAAGTGGACCGTATTATAGGGGAATCAGAAGAATTTGTAGAGTTCCTTCAAACTGAAGTTGGTGTCGATGTTAAGGTAGATGATCATGTGGTTGGTTCAGATGAGCAGATAATCATAATTTCTTCAGATGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAGGAAGCTTTGTTGCATATTCAAACGCGCATTGTTGATCTTGAGCTAGATGATGACAACATTATAACCACCAGGCTTGTTGTCCCATCTAGTGACATTGAATGTTTAGATGGAAGAGATGTATCACTATTAGAGATAAGTAGACTCACTGGCACAAATATTCAAATTCTCCCTAGAGAGCAGTTACCTCCCTGTGTTGCAAAAAATGATGAGCTTGTACAGATTGTAGGTGAGATCAAAGGGGCTCGAGAAGCTATTCTTGAGGTGACATCAAGACTAAAAAATTATTTGTACAGTGATTTTCTTCAAAGGGGTACAGCACCATCATCGGCCTCAGTACCTAATACGGAGATATCTTCTTCCATTAACATAGCTCCAGTTAACACTGGCACTGAAACTCCCATAACCTATCAGAATGTGCAACCTGCAGCAGCTGCACTTCCCTTAAAAGAAACTGGAGGATCTAGCACAGAGACAGGAAAGCAGAATGAAGGTGATCGCCACGATGATGTGATGATTAGTTTGAATAGGATTCCTGTACCACTTGTCACTAGAAGTACACTTGAAGTGGTCATACCGGAGTACGCAGTTCCAAAACTCACAGCAAAGTCCAAAAACAAGCTTGCTCAGATAAGTGAGTTGTCAGGAGCCACTGTAACACTTGTAGAGGATAGACCGGAGGAGACACAAAAGATTATTCGGATATCTGGTACTCCAGAGCAGGCAGAGAGAGCTCAGAGCTTGCTCCAAGGATTTATTTTGAGCAAAGAGCATTCAATGGTTATACTGCCTGGATGGTGTGGAGCTACGAAGACGGCAGACGCCACCTGTATCAATGTGGCACATGTTTTTCCTGCAACACGTGTAATCACTTCGTCTGTTTGTGGCAACATAGCTGGAGCATGA 2055 0.4579 MERSRSKRNYYYDQEYDSETLARTRPRYNHHYASSTHRHRGGGSGVRPKAQDSSLTVTTSYRILCHDIKAGGVIGKSGSIIKSIRQHTGAWINLHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGIGEEEEDYGGRGGGSSSRVATRLVVSRMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPHCVSMSEEIVQVVGDANAVKNAIVLISSRLRESQHRDRSHFHGRAHSPERFFPPDDDYMPQGAARRSSIDGATFGSRISTANMRSNSYPSLGYTMEPGAPPVADDAQPLYGEDLIFRILCPLDKVDRIIGESEEFVEFLQTEVGVDVKVDDHVVGSDEQIIIISSDEGPDDELFPAQEALLHIQTRIVDLELDDDNIITTRLVVPSSDIECLDGRDVSLLEISRLTGTNIQILPREQLPPCVAKNDELVQIVGEIKGAREAILEVTSRLKNYLYSDFLQRGTAPSSASVPNTEISSSINIAPVNTGTETPITYQNVQPAAAALPLKETGGSSTETGKQNEGDRHDDVMISLNRIPVPLVTRSTLEVVIPEYAVPKLTAKSKNKLAQISELSGATVTLVEDRPEETQKIIRISGTPEQAERAQSLLQGFILSKEHSMVILPGWCGATKTADATCINVAHVFPATRVITSSVCGNIAGA 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0188 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 57 109 IPR036612 GO:0003723
Lele01g0188 684 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 51 273 - -
Lele01g0188 684 Gene3D K Homology domain, type 1 160 242 IPR036612 GO:0003723
Lele01g0188 684 ProSiteProfiles Type-1 KH domain profile. 163 233 - -
Lele01g0188 684 CDD PCBP_like_KH 167 234 - -
Lele01g0188 684 SMART kh_6 403 477 IPR004087 GO:0003676
Lele01g0188 684 SMART kh_6 567 637 IPR004087 GO:0003676
Lele01g0188 684 SMART kh_6 57 138 IPR004087 GO:0003676
Lele01g0188 684 SMART kh_6 319 392 IPR004087 GO:0003676
Lele01g0188 684 SMART kh_6 162 238 IPR004087 GO:0003676
Lele01g0188 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 560 641 IPR036612 GO:0003723
Lele01g0188 684 CDD KH-I 570 633 - -
Lele01g0188 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 397 483 IPR036612 GO:0003723
Lele01g0188 684 MobiDBLite consensus disorder prediction 242 262 - -
Lele01g0188 684 CDD PCBP_like_KH 60 134 - -
Lele01g0188 684 Gene3D - 320 480 - -
Lele01g0188 684 ProSiteProfiles Type-1 KH domain profile. 58 130 - -
Lele01g0188 684 MobiDBLite consensus disorder prediction 242 260 - -
Lele01g0188 684 ProSiteProfiles Type-1 KH domain profile. 568 632 - -
Lele01g0188 684 Gene3D K Homology domain, type 1 57 140 IPR036612 GO:0003723
Lele01g0188 684 Pfam KH domain 61 109 IPR004088 GO:0003723
Lele01g0188 684 Pfam KH domain 570 633 IPR004088 GO:0003723
Lele01g0188 684 Pfam KH domain 166 234 IPR004088 GO:0003723
Lele01g0188 684 MobiDBLite consensus disorder prediction 33 53 - -
Lele01g0188 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 244 IPR036612 GO:0003723
Lele01g0188 684 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 374 IPR036612 GO:0003723
Lele01g0188 684 ProSiteProfiles Type-1 KH domain profile. 320 387 - -
Lele01g0188 684 Gene3D K Homology domain, type 1 567 640 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0188 Lele-ChrLele01 1047585 1053367 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0188 01 1047585 1053367 Lele02g0188 02 1021576 1026268 ECH
Lele01g0188 01 1047585 1053367 Lele01g0188 01 1047585 1053367 ECH
Lele01g0188 01 1047585 1053367 Lele03g0192 03 1024912 1029480 hybridization
Lele01g0188 01 1047585 1053367 Lele04g0185 04 1032216 1036960 hybridization