Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0582 ATGGAGCTTTCCCCCTCCTCTGCTGTGATCGCACAGCAAACTTGGGAGCTTGAGAACAACATCATCCCCATGGACACTCCCACTACCAGCGCCGATCAAGCCTCCGACGCCATCTTCTACTACGACGAGGCCGCCCAGACCGAATTCCAGAGAAGCAAGCCTTGGGTTAACGACCCCCACTACTTCAAGCGCGTTAAGATCTCCGCCCTTGCCCTTCTCAAGATGGTTGTCCATGCTCGTTCTGGTGGCACTATCGAAGTCATGGGCCTCATGCAGGGCAAGACTGATGGCGATGCCATCATCGTCATGGACGCCTTCGCTTTGCCCGTTGAAGGCACCGAGACTCGTGTCAATGCCCAGGCCGATGCCTACGAATATATGGTTGATTATTCTCAGACTAACAAGCAGGCTGGGCGTCTGGAAAATGTTGTTGGATGGTACCATTCCCACCCTGGTTATGGATGCTGGCTTTCGGGCATTGACGTGACTACGCAAATGCTAAACCAGCAATTTCAAGAGCCCTTTCTGGCTGTAGTCATTGATCCAACAAGGACGGTTTCTGCTGGAAAAGTTGATATTGGAGCATTCAGGACATACCCAGAAGGTTATAAGCCTCCAGATGAGCCTGTCTCTGAGTACCAAACGATCCCGTTAAATAAGATTGAAGACTTTGGTGTTCACTGTAAACAGTACTATGCGTTGGATATCACTTACTTCAAGTCTTCTCTTGATTCACATCTCTTGGATCTTCTATGGAACAAATATTGGGTGAATACACTTTCATCCTCTCCATTATTGGGTAATGGAGACTATGTCGCTGGACAAATATCAGATCTAGCTGAAAAGCTAGAACAAGCAGAAAATCAGTTGGCACACCCACGCTTTGGATCAATAATAGGTCCTCCTCAAAAAAAGAAAGGAGAAGAGTCTCCCCTTGCTAAGATTACTCGTGACAGTGCAAAAATTACTGTGGAGCAAGTTCATGGTTTGATGTCACAGGTCATCAAGGACATCCTCTTCAACTCTGTTCGTCAAGCAAACAAATCCGTTGCTGAAGCATCTGGTCCTGAACCCATGATTGAAAGCTGA 1089 0.4757 MELSPSSAVIAQQTWELENNIIPMDTPTTSADQASDAIFYYDEAAQTEFQRSKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQFQEPFLAVVIDPTRTVSAGKVDIGAFRTYPEGYKPPDEPVSEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHPRFGSIIGPPQKKKGEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQANKSVAEASGPEPMIES 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0582 362 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 62 173 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele03g0582 362 SMART pad1_6 64 201 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele03g0582 362 Pfam Cop9 signalosome subunit 5 C-terminal domain 261 341 IPR040961 -
Lele03g0582 362 SUPERFAMILY JAB1/MPN domain 64 201 - -
Lele03g0582 362 CDD MPN_RPN11_CSN5 54 326 - -
Lele03g0582 362 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 56 352 - -
Lele03g0582 362 Gene3D Cytidine Deaminase, domain 2 4 267 - -
Lele03g0582 362 ProSiteProfiles MPN domain profile. 65 202 IPR037518 -
Lele03g0582 362 FunFam COP9 signalosome complex subunit 5 5 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0582 Lele-ChrLele03 3440242 3443449 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0578 01 3408264 3411256 Lele03g0582 03 3440242 3443449 hybridization
Lele02g0572 02 3429866 3433376 Lele03g0582 03 3440242 3443449 hybridization