Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0527 ATGGCTTTTGCAAACTTCACTACTCCCATCAGAAACCCCATTTCCTGGCCAGCAATGGCGGTTTCTGATGACAACAAAAAGGGTGGCTTTCCATTATTTCCCAGTAACAAGGGCTTCTTCAGAACCCAACGCAGTTTTCTACCAGACTTGACTGTTACTAATGTTGTTACTCCATCGCCTCCGGTCGCTCCGCCGCCACTAACGCCGCCTGAGAGATCGGACACCACCGGCACTCGCCAGCATCCTGCATGGACTAGCATCCCGCAAGATAGATGGGAAGGAGAACTCCATGTTCAAGGACGAATACCATTATGGCTGAAAGGAACGTACCTGAGGAATGGTCCAGGGCTGTGGCACATAGGGGACTACAACTTCAGGCACCTTTTTGACGGCTACGCCACTCTGGTCAAGCTTCAGTTCGAGAACGGCCGGTTGATCGCCTGCCACCGCCAAGTGGAATCCCAGGCCTATCAAGCCGCTAAAAATAACCAAAAGCTTTGTTACCGTGAATTCTCCGAGGCTCCCAAGCCTGGTAATTTCTTAGCCTACGTGGGGGAACTCGCTAGTCTGTTCTCAGGCGCTTCGCTCACTGATAACGCAAACACCGGCGTGGTGAAACTCGGCGACGGACGTGTGGTTTGCCTGACGGAGACCCAGAAGGGGTCCATCGTGATAAACCCGAACACATTGGAGACAGTGGGGAGATTTGATTACAGTGACACGTTAGGGGGTTTGATCCACTCAGCACACCCTATTGTGACCGACAAAGAATTCTTGACGTTACTACCAGACCTGATAAAACCTGGTTATTTGGTGGTGAGAATGGAAGCCGGGTCGAATGAACGGAAGGTGATAGGACGGGTTAATTGTCGGGGCGGGCCAGCACCGGGTTGGGTTCACTCGTTTCCGGTGACTGAGCACTACATTATTGTGCCTGAAATGCCACTGAGATATTGTGCTCAGAATTTGCTGAGAGCTGAACCGACGCCGTTGTACAAGTTTGAGTGGCACCCTGAATCCAAAGCTTTTATGCATGTCATGTGCAGGACTAGTGGAAAGATAGTGGCGAGCGTAGAAGTGCCATTGTTCGTGACGTTCCATTTCATAAATGCGTATGAAGAAGAAGATGAAGATGGGAGAGTGACGGGCATTATCGCTGACTGTTGTGAGCATAGCGCCGACACCTCCATTCTTGATAGGCTTAGGCTACAGAATCTCCGCTCCTTCAACGGCCAGGATGTACTGCCGGATGCAAGGGTAGGAAGGTTCAGAATACCTATGGATGGGAGTGAATATGGGACATTGGAGGCAGCGTTGGAGCCGGAGGAGCATGGGAGAGGTATGGACATGTGCAGCTTCAACCCTAATTGTTTGGGGAAGAAATACAGATATGCTTATGCATGTGGAGCCAAGCGCCCTTGTAACTTCCCCAACACCGTCACCAAGCTGGATTTCGTGGAGAAGAAGGCGAAGAATTGGTACGAGGAAGGCGCTGTTCCCTCGGAACCCTTCTTCGTGGCTCGACCTGGAGCTGCAGAGGAAGACGATGGCGTGGTGATCTCCATAGTAAGTGAGAGAAACGGAGACGGATATGCGTTGGTGTTAGATGGTTCCAACTTTGAAGAGATAGCCAGAGCCAAGTTCCCTTATGGACTGCCCTACGGGTTGCATGGATGCTGGGTTCCTAAACACTGA 1695 0.5127 MAFANFTTPIRNPISWPAMAVSDDNKKGGFPLFPSNKGFFRTQRSFLPDLTVTNVVTPSPPVAPPPLTPPERSDTTGTRQHPAWTSIPQDRWEGELHVQGRIPLWLKGTYLRNGPGLWHIGDYNFRHLFDGYATLVKLQFENGRLIACHRQVESQAYQAAKNNQKLCYREFSEAPKPGNFLAYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVINPNTLETVGRFDYSDTLGGLIHSAHPIVTDKEFLTLLPDLIKPGYLVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYIIVPEMPLRYCAQNLLRAEPTPLYKFEWHPESKAFMHVMCRTSGKIVASVEVPLFVTFHFINAYEEEDEDGRVTGIIADCCEHSADTSILDRLRLQNLRSFNGQDVLPDARVGRFRIPMDGSEYGTLEAALEPEEHGRGMDMCSFNPNCLGKKYRYAYACGAKRPCNFPNTVTKLDFVEKKAKNWYEEGAVPSEPFFVARPGAAEEDDGVVISIVSERNGDGYALVLDGSNFEEIARAKFPYGLPYGLHGCWVPKH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0527 564 MobiDBLite consensus disorder prediction 57 82 - -
Lele03g0527 564 Pfam Retinal pigment epithelial membrane protein 95 562 IPR004294 GO:0016702
Lele03g0527 564 PANTHER BETA-CAROTENE DIOXYGENASE 92 562 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0527 Lele-ChrLele03 3100334 3103111 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0527 03 3100334 3103111 Lele03g0527 03 3100334 3103111 ECH
Lele01g0518 01 3072215 3076931 Lele03g0527 03 3100334 3103111 hybridization
Lele02g0504 02 3034330 3037152 Lele03g0527 03 3100334 3103111 hybridization