Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0673 ATGTTGATAACGTCACCAAAGGAGAAGCTAGGAGGCTTTCCCGTTTACCTTCACGTATATGATCTCACCCTCATTAATGGCAATGCCTATTGGCTTGGCCTCGGTGTTTACCATTCTGGTGTTCAAGTTCATGGGGTTGAATATGAATTTGGAGCGCATGAACACGACACCGCCGGCATTTTTGTGGTGGAACCCAGACACTGTCGTAGTTTCACATTCCAGAAAATCTATCCTCATCGGAACCACGGGTTTGGGCCCTAA 261 0.4713 MLITSPKEKLGGFPVYLHVYDLTLINGNAYWLGLGVYHSGVQVHGVEYEFGAHEHDTAGIFVVEPRHCRSFTFQKIYPHRNHGFGP 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0673 86 Pfam PPPDE putative peptidase domain 14 76 IPR008580 GO:0008233
Lele01g0673 86 PANTHER DESUMOYLATING ISOPEPTIDASE 13 76 IPR008580 GO:0008233
Lele01g0673 86 Gene3D PPPDE domains 10 81 IPR042266 -
Lele01g0673 86 ProSiteProfiles PPPDE domain profile. 13 86 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0673 Lele-ChrLele01 3918861 3919203 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0666 25 4181149 4183268 Lele01g0673 01 3918861 3919203 CCT
Lele26g0674 26 4286203 4288179 Lele01g0673 01 3918861 3919203 CCT
Lele27g1422 27 20491483 20493720 Lele01g0673 01 3918861 3919203 CCT