Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0560 ATGGATCATAACGCCGATATCAACGCCCCTCATTCCATGGGAACCACCATTATCGGCGTCACTTACAATGGCGGTGTGGTTCTTGGAGCTGACTCACGAACCAGCACCGGAGTGTACGTTGCAAACCGGGCGTCAGACAAAATTACGCAGTTGACTGATAATGTCTATGTTTGTCGCTCTGGATCGGCTGCTGATTCTCAGATTGTATCTGATTATGTGCGCTACTTCCTTCACCAACACAGTATACAGCTGGGACAACCTGCAACAGTCAAAGTTGCTGCAAACCTTGTCAGACTTCTGTCCTATAACAACAAGAATTTCTTACAGACTGGTTTAATTATTGGTGGATGGGACAAATATGAAGGTGGCCAAATCTACGGTGTTCCCCTCGGTGGAACTATAGTTCAACAACCTTTTGCTATTGGAGGATCTGGGTCCAGTTACTTGTATGGATTCTTTGACCAAGCATGGAAAGAAGGAATGACCAAAGATGAAGCAGAGGACTTAGTTAAAAAGGCGGTATCACTGGCCATTGCACGTGATGGTGCTAGTGGGGGTGTTGTCCGAACAGTTACTATAAATTCAGATGGAGTCACTAGGAAGTTTTATCCTGGGGACCAACTTCCTCTGTGGCACGAGGAGCTGGAGGCGCAGAACTCACTGCTGGACATCCTCGGTGCCCCTGAGCCCATGAGCATTTGA 702 0.4744 MDHNADINAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHSIQLGQPATVKVAANLVRLLSYNNKNFLQTGLIIGGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAVSLAIARDGASGGVVRTVTINSDGVTRKFYPGDQLPLWHEELEAQNSLLDILGAPEPMSI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0560 233 CDD proteasome_beta_type_6 15 202 - -
Lele01g0560 233 ProSiteProfiles Proteasome beta-type subunit profile. 14 193 IPR023333 -
Lele01g0560 233 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839|GO:0051603
Lele01g0560 233 Pfam Proteasome subunit 13 193 IPR001353 GO:0005839|GO:0051603
Lele01g0560 233 FunFam Proteasome subunit beta 15 214 - -
Lele01g0560 233 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 15 214 IPR029055 -
Lele01g0560 233 PRINTS Proteasome component signature 143 154 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lele01g0560 233 PRINTS Proteasome component signature 179 190 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lele01g0560 233 PRINTS Proteasome component signature 154 165 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lele01g0560 233 PRINTS Proteasome component signature 22 37 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lele01g0560 233 PANTHER METALLOPROTEASE TLDD 8 209 IPR023333 -
Lele01g0560 233 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 10 216 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0560 Lele-ChrLele01 3319708 3323088 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0560 01 3319708 3323088 Lele01g0560 01 3319708 3323088 ECH
Lele01g0560 01 3319708 3323088 Lele03g0563 03 3350493 3353614 hybridization
Lele01g0560 01 3319708 3323088 Lele04g0570 04 3462806 3466056 hybridization