Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01890 ATGTCTCAAGTCTTCAGCTTTTCCGGAAATGATGATTTTTGTCCTGGGGGTCCTATATATCCTAATCCCAAGGAACCATGTCTCTTCTTGTCTCTTGGCCGTTCAGTTGATTACTTTCCTCTGCAGAAGAGATCTCGGGTCAGTGTTCCATTTGATATCAATCGAGAATGGTTTGATGAGCAGAAGCAGAAGACATCTATTGAATCTTTGCCTGATGAATGCCTCTTTGAAATCCTTAGAAGGTTGCCGGTTGGCCAAGATAGGAGTGTCTGTGCTTCTGTATCCAAGCGCTGGCTTTTGCTTCTAAGCAGTATTTGTAAGGATGAAATATGCAGCAATGGAAATACCAGAGATGATAATGTGGGTGGCGATGATGATCAGGGATTTAGCAACGAAGGATATCTATCTCGAAACTTGGAGGGAAAGGAGGCAACAGATGTTAGACTTGCTGCCATTGCTGTTGGGACAGCTTCTCGAGGAGGTCTGGGGAAGCTTGCAATTCGTGGATGCGATTCAGGTCGTGGGGTGACTAGTGTAGGTCTCAAGGCCATTGGTCATGGATGTCCTTCTCTAAAGGTTTTCTCTGTGTTCGATGTTGCTACTATTGATGATGAAGGCCTAATGGAGATTGCCAGCGGGTGTCATAAGTTAGAGAAGCTTGAACTTTGCAAGTGTCCCAATATTTCTGACAAGAGTTTAATTGCAGTTGCGAAGAAGTGTCCCCGTCTGACTGAGTTATCAATAGAGTCGTGTCCCAACATAGGGAACAAAGGTATACAAGCTATTGGGAAGTTGTGCCCCAATCTAAGGTCTATATCAATCAAGGGTTGCTCTGGAGTTGGTGACCAGGGAGTTGCTGGCCTCATGTCTTCAACTTCTTATGTTCTATCAAAGGTGAAACTTGAGTCATTGATGGTGTCTGATCTCTCTCTAGCAATGATTGGGCATTATGGCTTTCAAGTAACTGATCTTGTCCTAAGTTGCCTCCCCAATGTCAGTGAGAAAGGTTTCTGGGTTATGGGTAATAGCCGTGGACTGCAGAAGTTGAATTCGATCACAATCGAATGCTGCCAAGGATTGACAGACACAGGGATCGGAGCTATTGGAAAGGGTTGTCCAAATGTGAAAAACTTCCAGCTTCGAAAGTGTGCATTTCTGTCAGACAAGGGGTTGGTTTCATTTACCAGGGCTGCTCTATCAATTGAGAGCCTACAATTGCAGGAGTGCCACAGAATTACCCAAATCGGGCTATTTGGTGTCTTTTTTCACTGTGCTTCAAGACTGAAGGTTCTTAATCTGATTAGCTGCTACGGGATCAAAGATCTGAACATGGATTTGCCAGCAATGTCTCCTTGTGAATCATTTCGGTCCTTAACAATCCGTGACTGCCCTGGATTTGGTGATGCTAATCTAGCTTTACTTGGAAAGCTGTGTCCTCGGCTTAAGCATGTTGAATTGAGTGGACTTCAGAGAGTAACAGACGTAGGGTTTCTTCCACTGCTGGAGCGTTCTGAGACTGGTCTGGCAAAAGTTAATCTAAGGGGATGTATAAATGTGACGGACAGAGTAGTTTTGCCTATTGTCAAATCACATGGATGGACTCTTGAGGTGCTATGCCTTGATGGTTGTAGAAGAGTCACCGATGCTAGCATGATGGCAATTGCAAGCAATTGCCCAATGCTGTCTGATCTTGATGTTTCCAAGTGTGCTATCACTGATACCGGTATTGCAGCTCTTGCACGCGGAAATCAGATCAGCCTGGAGATACTTTCTTTGGCAGGTTGTATATTGGTTTCAGACAAGAGCCTGCCGGCATTGAAAGAATTGGGTCAATCCCTTGCAGGGTTGAATATCAAGCGCTGCAGTGCAATCAGCAGCCGAGGGGTCAGCAAGCTTCAGGAGCTTCTGTGGACGTGTGACATCCTCTACTGA 1932 0.4519 MSQVFSFSGNDDFCPGGPIYPNPKEPCLFLSLGRSVDYFPLQKRSRVSVPFDINREWFDEQKQKTSIESLPDECLFEILRRLPVGQDRSVCASVSKRWLLLLSSICKDEICSNGNTRDDNVGGDDDQGFSNEGYLSRNLEGKEATDVRLAAIAVGTASRGGLGKLAIRGCDSGRGVTSVGLKAIGHGCPSLKVFSVFDVATIDDEGLMEIASGCHKLEKLELCKCPNISDKSLIAVAKKCPRLTELSIESCPNIGNKGIQAIGKLCPNLRSISIKGCSGVGDQGVAGLMSSTSYVLSKVKLESLMVSDLSLAMIGHYGFQVTDLVLSCLPNVSEKGFWVMGNSRGLQKLNSITIECCQGLTDTGIGAIGKGCPNVKNFQLRKCAFLSDKGLVSFTRAALSIESLQLQECHRITQIGLFGVFFHCASRLKVLNLISCYGIKDLNMDLPAMSPCESFRSLTIRDCPGFGDANLALLGKLCPRLKHVELSGLQRVTDVGFLPLLERSETGLAKVNLRGCINVTDRVVLPIVKSHGWTLEVLCLDGCRRVTDASMMAIASNCPMLSDLDVSKCAITDTGIAALARGNQISLEILSLAGCILVSDKSLPALKELGQSLAGLNIKRCSAISSRGVSKLQELLWTCDILY* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01890 643 SMART LRR_CC_2 532 557 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 584 609 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 240 265 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 610 635 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 346 371 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 188 213 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 452 477 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 398 423 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 372 397 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 266 291 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 505 530 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 214 239 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 478 503 IPR006553 -
Lapu9g01890 643 SMART LRR_CC_2 558 582 IPR006553 -
Lapu9g01890 643 FunFam EIN3-binding F-box protein 1 60 109 - -
Lapu9g01890 643 Gene3D Ribonuclease Inhibitor 253 447 IPR032675 -
Lapu9g01890 643 Gene3D Ribonuclease Inhibitor 133 252 IPR032675 -
Lapu9g01890 643 SUPERFAMILY RNI-like 173 419 - -
Lapu9g01890 643 Gene3D Ribonuclease Inhibitor 448 642 IPR032675 -
Lapu9g01890 643 FunFam EIN3-binding F-box protein 1 134 252 - -
Lapu9g01890 643 SMART fbox_2 70 111 IPR001810 GO:0005515
Lapu9g01890 643 SUPERFAMILY RNI-like 400 635 - -
Lapu9g01890 643 Pfam F-box domain 68 106 IPR001810 GO:0005515
Lapu9g01890 643 SUPERFAMILY F-box domain 62 104 IPR036047 GO:0005515
Lapu9g01890 643 FunFam EIN3-binding F-box protein 1 504 641 - -
Lapu9g01890 643 PANTHER UNCHARACTERIZED 347 521 - -
Lapu9g01890 643 Pfam Leucine Rich repeat 557 580 IPR001611 GO:0005515
Lapu9g01890 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Lapu9g01890 643 Gene3D - 59 111 - -
Lapu9g01890 643 FunFam EIN3-binding F-box protein 1 isoform A 290 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01890 Lapu-Chr9 33707006 33711136 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01890 K14515 - gmx:100805418 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01890 9 33707006 33711136 Lapu9g01890 9 33707006 33711136 ECH
Lapu8g00617 8 23817674 23822019 Lapu9g01890 9 33707006 33711136 PCT