Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu8g00617 ATGTTTATATGGGGAATTTGTGCTTTACTGATTTTTGTGCTATCGTTTGGGTTCTCAGGAGGTGATGACTTCTGCCCTGGGGGATCAATATACGCCAACCCCAAGGAAGCAAGTTTCTTCCTGCCTCTCGGTCCTCAAGTTGATGTGTACTTTCCTCCTAGGAAGAGGTCACGCGTCAACGCTCCATTCGTTCTGGATGGAGAATGGTTTGAGCAAAAGCAGAAAACCTCTATTGAAGCCTTGCCAGATGAGTGTCTCTTTGAGATCTTTAGAAGGTTGCCTTCTGGCGAGGACAGGAGTGCATGTGCTTGCGTTTCCAAGCGCTGGCTTATGCTTCTGAGCAGTATTTGCAAAGACGAAATCTGTGCCATCAAAAGTACCAGCGCAGAAACCATTGAAAAGGAGGGTGATGATGTAGAATTTGGAGGCGAGGGATATCTCTCTCGGAACTTGGAAGGAAAGAAGGCCACGGATGTTAGACTGGCTGCCATAGCTGTTGGGACTGCATCTCGGGGAGGGTTGGGGAAGCTTTCCATCCGTGGAAGCAACATGGTTCGCGGGGTGACTAGTCTTGGTCTCAAGGCAGTTGCTCATGGATGCCCTTCTTTGAAGTCTCTTTCTCTATGGAACGTTTCTACTGTTGGTGATGAGGGTCTAATGGAGATTGCTAATGGTTGTCACCAGCTAGAGAAGCTCGACCTTTGCAAGTGCCCTGCAATTACTGATAAGGCTTTGGTTGCAATTGCAAAGAACTGCCAGAACCTGGCTGAGTTGTCGTTGGAATCATGCCCTAACCTTGGTAATGAAGGTCTACGAGCTATTGGGAAGTTCTGCCCCAATTTAAGGTCCGTAACCATCAAGGACTGCACAGGTGTTAGCGATCAGGGAATTGCTGGATTGTTTTCAACTTCTTTGGTTTTGACAAAGGTGAAGCTACAGGCACTGTCTGTTTCGGATCTCTCTCTTGCCGTTATTGGACACTATGGCAAGTCTGTTACTGATCTTGTCCTTAATTGCCTCCCAAATGTAAGCGAGAAGGGGTTCTGGGTAATGGGAAATGGTAGTGGATTGCAGAAGTTGAAGTCACTCACAGTTGCATCATGCAGAGGAGTAACCGATATTGGACTTGAAGCTGTAGGAAAGGGTTGCCCAAATCTGAAGATTGCACACCTTCACAAGTGTTCCTTTCTGTCCGACAATGGGTTGATATCGTTTGCTAAGGCTGCTTCATCACTCGAGAGCCTTCGATTGGAAGAGTGCCACAGAATCACCCAGTTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTTCTAAATTGAAGTCCATCTCTTTGGTGAGGTGCTACGGAATCAAAGACCTGAATTTGGTGTTGCCGACTATATCTCCATGTGAATCACTGAGGTCATTAACTATCTGCAACTGCCCTGGATTTGGCGACGCCTCCCTGTCTGTACTGGGAAAGCTGTGCCCTAAGCTTCAGCATGTTGAACTGAGTGGACTCGATGGAGTGACTGATGCCGGGCTTCTTCCACTGCTTGAGAGTTCTGAGGCTGGTTTGGTTAAAGTGAATCTCAGTGGTTGCACAAATGTCACAGACAAAGTAGTTTCATCCTTGGCCAATGTTCATGGTTGGACTCTTGAGAACCTAAACCTTGATGGTTGTAAAAACATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGCGATCTTGATGTCTCGAAGTGCTCAATCACAGATGCTGGGATAGCAGCCCTGGCACATGCCCAACAGATTAATCTGCAAATTCTCTCTTTGTCAGGTTGTGCTTTGGTCTCGGACAGGAGCTTGCCCGCCTTGAGAAAATTGGGCCGCACCCTTTTGGGACTAAACATCCAGCACTGCAATGCAATTAACAGCAGCACGGTTGACATGCTTGTGGAGCTTCTCTGGAGGTGTGACATCCTCTCATAA 1965 0.4718 MFIWGICALLIFVLSFGFSGGDDFCPGGSIYANPKEASFFLPLGPQVDVYFPPRKRSRVNAPFVLDGEWFEQKQKTSIEALPDECLFEIFRRLPSGEDRSACACVSKRWLMLLSSICKDEICAIKSTSAETIEKEGDDVEFGGEGYLSRNLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNMVRGVTSLGLKAVAHGCPSLKSLSLWNVSTVGDEGLMEIANGCHQLEKLDLCKCPAITDKALVAIAKNCQNLAELSLESCPNLGNEGLRAIGKFCPNLRSVTIKDCTGVSDQGIAGLFSTSLVLTKVKLQALSVSDLSLAVIGHYGKSVTDLVLNCLPNVSEKGFWVMGNGSGLQKLKSLTVASCRGVTDIGLEAVGKGCPNLKIAHLHKCSFLSDNGLISFAKAASSLESLRLEECHRITQFGFFGVLFNCGSKLKSISLVRCYGIKDLNLVLPTISPCESLRSLTICNCPGFGDASLSVLGKLCPKLQHVELSGLDGVTDAGLLPLLESSEAGLVKVNLSGCTNVTDKVVSSLANVHGWTLENLNLDGCKNISDASLMAIAENCALLCDLDVSKCSITDAGIAALAHAQQINLQILSLSGCALVSDRSLPALRKLGRTLLGLNIQHCNAINSSTVDMLVELLWRCDILS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu8g00617 654 FunFam EIN3-binding F-box protein 1 71 120 - -
Lapu8g00617 654 FunFam EIN3-binding F-box protein 1 265 454 - -
Lapu8g00617 654 Pfam Leucine Rich repeat 251 274 IPR001611 GO:0005515
Lapu8g00617 654 Pfam Leucine Rich repeat 575 591 IPR001611 GO:0005515
Lapu8g00617 654 Pfam Leucine Rich repeat 489 511 IPR001611 GO:0005515
Lapu8g00617 654 SMART LRR_CC_2 516 541 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 543 568 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 200 225 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 278 303 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 595 620 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 569 593 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 489 514 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 357 382 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 463 488 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 252 277 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 383 408 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 226 251 IPR006553 -
Lapu8g00617 654 SMART LRR_CC_2 409 434 IPR006553 -
Lapu8g00617 654 FunFam EIN3-binding F-box protein 1 146 264 - -
Lapu8g00617 654 SUPERFAMILY RNI-like 319 650 - -
Lapu8g00617 654 Gene3D Ribonuclease Inhibitor 458 654 IPR032675 -
Lapu8g00617 654 PANTHER UNCHARACTERIZED 545 637 - -
Lapu8g00617 654 Gene3D Ribonuclease Inhibitor 146 265 IPR032675 -
Lapu8g00617 654 Gene3D Ribonuclease Inhibitor 266 457 IPR032675 -
Lapu8g00617 654 SMART fbox_2 81 122 IPR001810 GO:0005515
Lapu8g00617 654 SUPERFAMILY RNI-like 193 302 - -
Lapu8g00617 654 SUPERFAMILY F-box domain 71 115 IPR036047 GO:0005515
Lapu8g00617 654 Gene3D - 71 121 - -
Lapu8g00617 654 FunFam EIN3-binding F-box protein 1 457 654 - -
Lapu8g00617 654 CDD F-box_AtTIR1-like 78 115 - -
Lapu8g00617 654 Pfam F-box-like 78 112 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu8g00617 Lapu-Chr8 23817674 23822019 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu8g00617 K14515 - gmx:100819226 1170.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00617 8 23817674 23822019 Lapu8g00617 8 23817674 23822019 ECH
Lapu8g00617 8 23817674 23822019 Lapu9g01890 9 33707006 33711136 PCT