Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01119 ATGGATTCAAGTTCATCCCCGGAATTCGAATATTTGTTTAAGTTGTTGATGATTGGGGACTCAGGTGTTGGCAAGAGTAGTCTCCTCCTCTGTTTCACCACTGATTCCTTTGAAGATCTTTCTCCCACAATTGGGGTTGATTTTAAGGTCAAGTATTTGAACATAGAAGGGAAAAAGCTGAAGCTTGCCATTTGGGACACAGCTGGTCAAGAGAGATTCAGAACATTGACGAGTTCTTACTACCGAGGTGCACAAGGGATCATTATGGTTTATGATGTAACTCGGCGGGAAACGTTTACAAATCTCTCTGAAATATGGTCAAAGGAGATAGAACTTTATTCAACAAATTCGGAATGCATCAAGATGCTTGTTGGAAACAAAGTGGATAAGGAGGGTGATAGAGTTGTGACCAAGAAAGAGGGAATAGACTTTGCCAGGGAATGTGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTACAGCAATGCTTTGAAGAACTTGTTCTGAAGATTCTGGATACACCTAGCCTCTTAGCAGAGGGCACTAAGAGCATTAAAAAGAACATTTTTAAGGACAAGCCATCCAATAATGCCACAAGTAGTTGTTGCTGA 621 0.4074 MDSSSSPEFEYLFKLLMIGDSGVGKSSLLLCFTTDSFEDLSPTIGVDFKVKYLNIEGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWSKEIELYSTNSECIKMLVGNKVDKEGDRVVTKKEGIDFARECGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGTKSIKKNIFKDKPSNNATSSCC* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01119 206 SMART rab_sub_5 13 177 - -
Lapu9g01119 206 CDD Rab18 13 174 - -
Lapu9g01119 206 SMART ras_sub_4 10 177 - -
Lapu9g01119 206 NCBIfam small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Lapu9g01119 206 FunFam Ras-related protein RABC1 6 206 - -
Lapu9g01119 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 186 IPR027417 -
Lapu9g01119 206 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
Lapu9g01119 206 PRINTS Transforming protein P21 ras signature 152 174 - -
Lapu9g01119 206 PRINTS Transforming protein P21 ras signature 13 34 - -
Lapu9g01119 206 PRINTS Transforming protein P21 ras signature 117 130 - -
Lapu9g01119 206 PRINTS Transforming protein P21 ras signature 35 51 - -
Lapu9g01119 206 PRINTS Transforming protein P21 ras signature 53 75 - -
Lapu9g01119 206 PANTHER RAS-RELATED PROTEIN RAB 12 189 - -
Lapu9g01119 206 SMART rho_sub_3 15 177 IPR001806 GO:0003924|GO:0005525
Lapu9g01119 206 ProSiteProfiles small GTPase Ras family profile. 4 206 IPR001806 GO:0003924|GO:0005525
Lapu9g01119 206 SMART arf_sub_2 1 178 - -
Lapu9g01119 206 ProSiteProfiles small GTPase Rab1 family profile. 8 206 - -
Lapu9g01119 206 SMART ran_sub_2 18 202 - -
Lapu9g01119 206 Gene3D - 6 206 IPR027417 -
Lapu9g01119 206 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01119 Lapu-Chr9 24230701 24240690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01119 14 167 EF-hand Containing Proteins AT5G27540 27.500 5.31e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01119 K07910 - gmx:100779729 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01119 9 24230701 24240690 Lapu9g01119 9 24230701 24240690 ECH
Lapu9g01119 9 24230701 24240690 Lapu3g03504 3 58373469 58377306 PCT