Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00878 ATGGCTGAAGAAGTTTCAAAGACAAGCACTCCTCAAGAGGAAGTGGTGGTCGCTCACGTGGCACCTGCTGACCAATCAGACACCAACGTTGTTGTTTCCGTCGAAGAAGAAGAAGAAGAAGAAGAAAAGGCGTCCCCGGAGAAGGAGAACATTCCAGAAACTGAGACGGAGGTTTCCAAAGATAACATTCCGGAATCAGGTTCGTTCAAGGAAGAAAGCACCATTGTCTCGGACCTTCCAGAAACCGAGAAAAAAGCACTGCAAGAACTCAAACAACTCATTCAGGAAGCACTCCACAAACACGACTTTTCTGCGCCTCAGAATAACCACCCTCCCAAAGATGAAAAGCCCGAAGATTCCACCGACAGCAAGGACGAACAGAAGCCCCTGGAGGAAGAGAAGGAACCTGCTGCTGCTGCGGCTGCTGACGTGGCAGACGCGACAGAAAAAGTGGCCGCTGAAGTGAAGGAAACTGAAACTAAAACTGCAACTGAGGTTGTTGAAGAGAAAGTGGCTGTTATCGATGCTGCTTCTGTGGAGCAGGATGGAGCGAAAACGGTGGAGGCTATCGAGGAGAGCGTTGTGTCTGTGACTGTGTCTGAGGAGGAAGCGAAGGTGGAAGCTGCTTCCGCTTCCCCCGAAGAGGTTTCGATTTGGGGAGTGCCGCTTCTTGCTGATGAAAGGAGCGATGTGATTCTGCTGAAGTTTCTGCGTGCGAGGGACTTCAAGGTGAAGGATGCGTTTGCGATGATAAAGGGGACGATTCGGTGGAGGAAGGAGTTCGGGATGGAGGAGTTGTTGGAGGAGGAGTTGGGGGATGATTTGGAGAAGGCGGTGTACATGCATGGGTTTGACAAGGAGGGTCACCCTGTGTGTTATAACGTCTATGGGGAGTTTCAGAACAAGGAGTTATACAAGAAGAGTTTCTCTGACGAGGAGAAGAGGCACAGGTTCCTGAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAAGCTTGATTTTACCCCTGGTGGGATAAGCACCATTGTTCAAGTCAATGATCTCAAGAACTCTCCTGGACCTGCCAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTGCAGTTGCTTCAGGATAACTATCCCGAGTTTGTAGCTAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGCCCTTCCAAATCAGCCGAGACTCTTTTGAGATACATTGCTGCGGAGCAACTTCCGGTCAAGTATGGTGGACTAAGCAAAGATGGGGAATTCGGAATTTCCGATGCGGTTACTGAAATTACAGTGAGGCCTGCAGCAAAACATACGGTGGAGTTTCCAGTTACTGAGAACTCCCTACTGTCTTGGGAACTCAGAGTAATAGGGTGGGACGTAAGCTATGGGGCAGAGTTTGTGCCAAGTTCAGAGGGAAGCTATACTGTGATCATCCAGAAGGCTAGAAAGGTCGCTTCATCAGAAGAACCGGTGCTTTGCAACAATTATAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAACCAAAGCTCTAAGAAGAAGAAACTCTTGTACCGCTTGAAGGTCAAGCCCTCCTCTTCTGACTGA 1665 0.4895 MAEEVSKTSTPQEEVVVAHVAPADQSDTNVVVSVEEEEEEEEKASPEKENIPETETEVSKDNIPESGSFKEESTIVSDLPETEKKALQELKQLIQEALHKHDFSAPQNNHPPKDEKPEDSTDSKDEQKPLEEEKEPAAAAAADVADATEKVAAEVKETETKTATEVVEEKVAVIDAASVEQDGAKTVEAIEESVVSVTVSEEEAKVEAASASPEEVSIWGVPLLADERSDVILLKFLRARDFKVKDAFAMIKGTIRWRKEFGMEELLEEELGDDLEKAVYMHGFDKEGHPVCYNVYGEFQNKELYKKSFSDEEKRHRFLRWRIQFLEKSIRKLDFTPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVRPAAKHTVEFPVTENSLLSWELRVIGWDVSYGAEFVPSSEGSYTVIIQKARKVASSEEPVLCNNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSSD* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00878 554 Gene3D GOLD domain 453 549 - -
Lapu9g00878 554 MobiDBLite consensus disorder prediction 1 143 - -
Lapu9g00878 554 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 448 550 IPR036598 -
Lapu9g00878 554 Pfam CRAL/TRIO, N-terminal domain 205 252 IPR011074 -
Lapu9g00878 554 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 268 443 IPR001251 -
Lapu9g00878 554 PANTHER PATELLIN-1 127 551 IPR044834 GO:0008289
Lapu9g00878 554 ProSiteProfiles GOLD domain profile. 447 548 IPR009038 -
Lapu9g00878 554 CDD SEC14 279 438 IPR001251 -
Lapu9g00878 554 PRINTS Cellular retinaldehyde-binding protein signature 232 254 - -
Lapu9g00878 554 PRINTS Cellular retinaldehyde-binding protein signature 395 414 - -
Lapu9g00878 554 SMART CRAL_TRIO_N_2 229 254 IPR011074 -
Lapu9g00878 554 MobiDBLite consensus disorder prediction 106 139 - -
Lapu9g00878 554 MobiDBLite consensus disorder prediction 76 98 - -
Lapu9g00878 554 Gene3D - 199 452 IPR036865 -
Lapu9g00878 554 SUPERFAMILY CRAL/TRIO N-terminal domain 75 270 IPR036273 -
Lapu9g00878 554 SUPERFAMILY CRAL/TRIO domain 278 440 IPR036865 -
Lapu9g00878 554 MobiDBLite consensus disorder prediction 45 67 - -
Lapu9g00878 554 Pfam CRAL/TRIO domain 277 437 IPR001251 -
Lapu9g00878 554 SMART sec14_4 273 440 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00878 Lapu-Chr9 13148063 13152286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00878 233 432 Acyl Lipid Metabolism Gene Families AT1G55840 28.241 6.49e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00878 - - gmx:100805585 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00878 9 13148063 13152286 Lapu9g00878 9 13148063 13152286 ECH
Lapu3g03483 3 58138025 58141823 Lapu9g00878 9 13148063 13152286 PCT