Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03483 ATGGCTGAGGAGGCTCCAAACCCAGCACCACCTTCTCAGGAGCCTGTGGTGCAAGTGGAGGAAGTGGTGGTAACTGATGTTCCTCAGTCTGCAGACAAAACACCACCGCCACCACCACCACCAACCAGTGTTCCTGTTGAGAGAGATTCACCACCACAACCTGAGCCTGAGGCGCCGGAGAAGAAGCCTGTTGAGGAAACCGTCACTCTCGAGACTCACCTCTCCAAACCCAACAACGCTGATGACATCAGCAATGATGACAAAGTCCCTGAATTCAAGGAAGAAAGCACCAAACTTTCTGACCTCTCGGAAAACCAAAACAAGGCACTCCAAGACCTCAAGAAGCTCGTTCAAGAAGCTCTCAAAAGTCATGACTTTTCATCCAAAGAAGAAAAAAAGACACCACCACCAACAGCTTCAACTGTTGACAAGGAAGAACAACAGCCGCAGCAGCAGCAGCAACAAGAAGAAGTTGTGACTGAAGATAAAACTGATGCTGCCCCAGAAAAAACTGAGGAAGAACAAGTTGAAACAAAGAAAGAGGAAGAAGGAGAAAATGAAGAAGGGAAGAAGGAGGAAGTGAAAGAAAAGAAGGAAGATGCTACTGTGGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTCTCTTCTTCTGTTCAGCCTCAAGCTGAGGAGAAAGCTTCTGAAACGGAAGCCAAAGAGGAAGCTTCACCGCCACTTCCACCGGAAGAAGTTTCCATTTGGGGAGTGCCCCTTCTTGCAGATGAGAGGAGCGATGTGATTCTTTTGAAGTTTCTGCGCGCGAGAGAGTTTAAAGTTAAGGAGGCGTTCACCATGCTGAAGAATACGATCCGGTGGAGGAAGGAGTTTGGGATGGAGGAGCTGATGGAGGAGAAGCTGGGGGATGAGTTGGAGAAGGTGGTCTTCATGCATGGCTCTGACAAGGAGGGCCACCCCGTGTGTTACAACATATACGGGGAGTTCCAGAACAAGGACTTGTACAAGAAGACTTTTTTCGATGAGGAGAAGAGGGAGAAGTTCCTCAGATGGAGAATTCAGTTCCTGGAAAAGAGTATAAGGAAGTTGGATTTCAACCCTGGTGGCATTTGCACCATTGTTCAGGTCAATGATCTCAAGAACTCTCCTGGACTAGCCAAGTGGGAACTAAGACAAGCCACCAAAAATGCCCTACAATTGCTTCAAGACAATTACCCTGAATTTGTAGCTAAACAGGTGTTCATTAATGTACCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTCACTCAAAGGACTAAGAGTAAGTTTGTCTTTGCTGGGCCTTCTAAATCGACGGAAACCCTTTTGAGATATATAGCTCCGGAGCAGCTACCGGTAAAGTATGGTGGATTAAGCAAAGATGGGGAGTTCGGAAATACCGATGCTGTTACAGAAATCACAGTGAGGCCGGCAGCCAAGCATACTGTGGAATTTTCAGTTACTGAGAACTGTCTACTCTCTTGGGAGCTGAGAGTAATAGGGTGGGAAGTAAGCTATGGTGCAGAATTTGTACCAGACTCAGAAGGAAGCTATACAGTAATTGTCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCAGTGCTTTGCAATAGTTTTAAGGTTGGTGAACCTGGAAAAGTTGTTCTCACAATTGACAACACAAGCTCCAAGAAGAAGAAGCTCTTGTACCGTTTGAAGACCAAACCTTCCCCCTCAGACTAA 1770 0.4661 MAEEAPNPAPPSQEPVVQVEEVVVTDVPQSADKTPPPPPPPTSVPVERDSPPQPEPEAPEKKPVEETVTLETHLSKPNNADDISNDDKVPEFKEESTKLSDLSENQNKALQDLKKLVQEALKSHDFSSKEEKKTPPPTASTVDKEEQQPQQQQQQEEVVTEDKTDAAPEKTEEEQVETKKEEEGENEEGKKEEVKEKKEDATVDDDGAKTVEAIEETVVAVSSSVQPQAEEKASETEAKEEASPPLPPEEVSIWGVPLLADERSDVILLKFLRAREFKVKEAFTMLKNTIRWRKEFGMEELMEEKLGDELEKVVFMHGSDKEGHPVCYNIYGEFQNKDLYKKTFFDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGLAKWELRQATKNALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLSKDGEFGNTDAVTEITVRPAAKHTVEFSVTENCLLSWELRVIGWEVSYGAEFVPDSEGSYTVIVQKARKVASSEEPVLCNSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKPSPSD* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03483 589 MobiDBLite consensus disorder prediction 53 69 - -
Lapu3g03483 589 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 484 582 IPR036598 -
Lapu3g03483 589 Pfam CRAL/TRIO, N-terminal domain 248 288 IPR011074 -
Lapu3g03483 589 Coils Coil 99 123 - -
Lapu3g03483 589 SMART CRAL_TRIO_N_2 264 289 IPR011074 -
Lapu3g03483 589 CDD SEC14 309 473 IPR001251 -
Lapu3g03483 589 MobiDBLite consensus disorder prediction 115 139 - -
Lapu3g03483 589 SUPERFAMILY CRAL/TRIO N-terminal domain 98 304 IPR036273 -
Lapu3g03483 589 SMART sec14_4 308 475 IPR001251 -
Lapu3g03483 589 MobiDBLite consensus disorder prediction 158 212 - -
Lapu3g03483 589 MobiDBLite consensus disorder prediction 217 231 - -
Lapu3g03483 589 ProSiteProfiles GOLD domain profile. 482 583 IPR009038 -
Lapu3g03483 589 MobiDBLite consensus disorder prediction 1 248 - -
Lapu3g03483 589 Gene3D - 298 488 IPR036865 -
Lapu3g03483 589 PANTHER PATELLIN-1 153 586 IPR044834 GO:0008289
Lapu3g03483 589 MobiDBLite consensus disorder prediction 31 52 - -
Lapu3g03483 589 SUPERFAMILY CRAL/TRIO domain 313 475 IPR036865 -
Lapu3g03483 589 Gene3D - 227 295 - -
Lapu3g03483 589 Pfam CRAL/TRIO domain 312 472 IPR001251 -
Lapu3g03483 589 MobiDBLite consensus disorder prediction 80 101 - -
Lapu3g03483 589 Gene3D GOLD domain 489 583 - -
Lapu3g03483 589 MobiDBLite consensus disorder prediction 140 157 - -
Lapu3g03483 589 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 303 478 IPR001251 -
Lapu3g03483 589 PRINTS Cellular retinaldehyde-binding protein signature 267 289 - -
Lapu3g03483 589 PRINTS Cellular retinaldehyde-binding protein signature 430 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03483 Lapu-Chr3 58138025 58141823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03483 268 467 Acyl Lipid Metabolism Gene Families AT1G55840 27.315 1.97e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03483 - - gmx:100788197 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03483 3 58138025 58141823 Lapu3g03483 3 58138025 58141823 ECH
Lapu3g03483 3 58138025 58141823 Lapu9g00878 9 13148063 13152286 PCT