Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00873 ATGCTGAAGCTCTTTAGGGCCTATCAGTGTTTCCTCGCCTGCTTCCTCGTCATCTCTATCGTTGTATCCGTCTTCACAGGTAAAAAGATGGCAGCTGAGCTAGTCAATGGAGCAACAAGCGAGAAACTGGCTGAAACTGACTGGACAAAAAATATTGAAATCTGTGAGCTAGTTGCTCATGATAGAAGGCAAGCTAGAGATGTTGTTAAAGCTATAAAAAAGAGACTAGGAAGTAAACACCCCGATACTCAACTTTATGCTGTTATGTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTCATTGATACTGGAGTTATTCCAATTCTAGTAAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGCGGGAGAGGATCTTTCTCCTACTAGATGCTACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGAGTTGGTGAGTGCCGGAGTGCAGTTTTCTCAAAGGGATCAAGTGGTCCAATCAAACCATCCTAGTTCACAACCTAATAGGACCAGTAATGCACCAAACAGGGAGCAGGCCGCACCCAGACATGAAGCAGTTGCTCAGCAAGCTGAGTCCCAGACTGTCCCTGAATCTAGCATTATTCAAAAGGCTAGCAATGCATTAGAAGTACTAAAAGAGGTACTGGATGCCGTTGATGCTCAAAATCCTCAGGGAGCTAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAGCAAAGGGTTATGCATCTTGTGATGGCTTCTCGAGATGAAAGAATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCCACAACAACTGCTACTCGGTTTGACCATGAGGAAGGGGAGGAAGAAGAGGAGCCTGAACAGTTAGTCCGAAGATTACGTAAGGGAAAGGCTTGTGCAAGACCTGAAGATGAGGAGACAGAAACCAACATCCCTCCCTTGGGTTTACTTGGAGAGAGACTCAATCGTCCACTAATAAGACCACTCTCAATAGAGCCACAATCTCGAGATGCTGAAACTCGATCTCCACCTGTTGTGATCCCACCATCTCGAGAATCTCCACCAGTTGTGATCCCACCGCCACGGCCGAAACAGAACGGCGATGTTTCTCATCATGTGGCAATTCCACCACCACCTGCAAAGCATGTTGAGAGGGAGAAGTTTTTTCAGGAAAACAAGGATGGGTCTAATTTGTCTGGCCACATGAGAGGCCTCTCCTTGCATAGTCGTAATGGCAGCAGCTCTCACAGCGGAAGCTTTGATTTTAGTGAATGA 1365 0.4469 MLKLFRAYQCFLACFLVISIVVSVFTGKKMAAELVNGATSEKLAETDWTKNIEICELVAHDRRQARDVVKAIKKRLGSKHPDTQLYAVMLLEMLMNNIGEHIHEQVIDTGVIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYELVSAGVQFSQRDQVVQSNHPSSQPNRTSNAPNREQAAPRHEAVAQQAESQTVPESSIIQKASNALEVLKEVLDAVDAQNPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDDLLAGRATTTATRFDHEEGEEEEEPEQLVRRLRKGKACARPEDEETETNIPPLGLLGERLNRPLIRPLSIEPQSRDAETRSPPVVIPPSRESPPVVIPPPRPKQNGDVSHHVAIPPPPAKHVEREKFFQENKDGSNLSGHMRGLSLHSRNGSSSHSGSFDFSE* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00873 454 MobiDBLite consensus disorder prediction 327 346 - -
Lapu9g00873 454 MobiDBLite consensus disorder prediction 423 454 - -
Lapu9g00873 454 Pfam VHS domain 33 140 IPR002014 GO:0035091|GO:0043130
Lapu9g00873 454 Gene3D - 25 165 IPR008942 -
Lapu9g00873 454 MobiDBLite consensus disorder prediction 359 454 - -
Lapu9g00873 454 MobiDBLite consensus disorder prediction 377 392 - -
Lapu9g00873 454 ProSiteProfiles GAT domain profile. 207 295 IPR004152 GO:0035091|GO:0043130
Lapu9g00873 454 ProSiteProfiles VHS domain profile. 38 167 IPR002014 GO:0035091|GO:0043130
Lapu9g00873 454 SUPERFAMILY ENTH/VHS domain 33 166 IPR008942 -
Lapu9g00873 454 SUPERFAMILY GAT-like domain 172 296 - -
Lapu9g00873 454 SMART VHS_2 31 163 IPR002014 GO:0035091|GO:0043130
Lapu9g00873 454 MobiDBLite consensus disorder prediction 170 192 - -
Lapu9g00873 454 CDD GAT_GGA-like_plant 215 293 - -
Lapu9g00873 454 MobiDBLite consensus disorder prediction 408 422 - -
Lapu9g00873 454 CDD VHS 31 159 - -
Lapu9g00873 454 MobiDBLite consensus disorder prediction 301 320 - -
Lapu9g00873 454 Pfam GAT domain 221 296 IPR004152 GO:0035091|GO:0043130
Lapu9g00873 454 Coils Coil 216 236 - -
Lapu9g00873 454 Gene3D - 204 304 IPR038425 -
Lapu9g00873 454 PANTHER TOM1-LIKE PROTEIN 30 440 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lapu9g00873 454 MobiDBLite consensus disorder prediction 170 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00873 Lapu-Chr9 13110095 13116536 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00873 - - pvu:PHAVU_009G157500g 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00873 9 13110095 13116536 Lapu9g00873 9 13110095 13116536 ECH
Lapu3g03480 3 58101079 58106725 Lapu9g00873 9 13110095 13116536 PCT