Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03480 ATGGCAGCTCTGGTCATTGCTGCAACAAATGAGAAATTGGCTGAAACCGATTGGATGAAAAATATTGAAATCTGTGAATTAGTTGCTCGTGATCAAAGGCAAGCTAGAGATATCGTTAAAGCTATAAAAAAGAGGCTGGGTTACAAGAACCCTAATGTTCAACTTTATGCAGTCTCGTTGCTAGAAATGTTGATGAACAATATTGGAGATCATGTTCATCAGCAGGTGATTGATACAGGAATCATCCCTATTCTTGTAAAAATTGTGAAGAAAAAATCTGATTTGCCTGTAAGGGAGCGGATATTTCTGCTACTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATCATGCATATCATGATTTGGTGAGTGCTGGGGTGCAGTTTCCTCAAAGGGGTCAAGTGAACCAATCTAATCGTCCTCGTTCACAACTTAATGGGATCAACAATGTACCGAACACAGATCAGGCTCGGACTAGCCATCAGCAATCAGAGTCCCAAACTGTTGCTGAATCTAGTATTATTCAAAAGGCTAGTAATGCGTTAGAAGTTTTAAGAGAAGTCCTTGATGCTATTAATGCCCAACATCCACAGGCAGCAAAAGATGAATTCACTCTTGACCTTGTTGAACAGTGTTCATTTCAGAAGCAAAGGGTAGTGCATCTTGTGATGACTTCTCGTGATGAGAGGATAGTTTCTCGAGCAATTGAATTAAACGAGCAACTCCAGAAAGTTCTTACAAGACATGATGTACTTCTTTCGGGCAGAGTCATGACAATAGCTAATCACTTGGAGTGTGAAGAAGCAGAGGAGGAAGAAGAACCAGAACAGTTATTCCGGAGACTACGCAAAGGAAAGGCTTGCGCAAGGCCTGAAGATGAAGAAAGTGAAGGCGAGTTCCCTCACTTTGGTTTGCTTGAACAGAGACTCAACCGTCCGTTAATAAGACCATTATCTTTGGAGTCATCTCGAGAAGCTAATAGTTGTCCTGCACCTGCTGTGATTCCTCCTCACATGGCAATTCCACCACCACCTTCAAAACACATCGAGAGGGAGAGATATTTTCAGGAAAATAAAAAGGATGGTGCTACTTTGGCTGGCCACTTGAGAGGCCTTTCCTTGCATTCTCACAATGGCAGCAGCTCTCACAGTGGAAGCTTTGATTTTAGTGATTGA 1197 0.4219 MAALVIAATNEKLAETDWMKNIEICELVARDQRQARDIVKAIKKRLGYKNPNVQLYAVSLLEMLMNNIGDHVHQQVIDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYHAYHDLVSAGVQFPQRGQVNQSNRPRSQLNGINNVPNTDQARTSHQQSESQTVAESSIIQKASNALEVLREVLDAINAQHPQAAKDEFTLDLVEQCSFQKQRVVHLVMTSRDERIVSRAIELNEQLQKVLTRHDVLLSGRVMTIANHLECEEAEEEEEPEQLFRRLRKGKACARPEDEESEGEFPHFGLLEQRLNRPLIRPLSLESSREANSCPAPAVIPPHMAIPPPPSKHIERERYFQENKKDGATLAGHLRGLSLHSHNGSSSHSGSFDFSD* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03480 398 SMART VHS_2 1 133 IPR002014 GO:0035091|GO:0043130
Lapu3g03480 398 SUPERFAMILY GAT-like domain 169 263 - -
Lapu3g03480 398 MobiDBLite consensus disorder prediction 361 398 - -
Lapu3g03480 398 Coils Coil 182 202 - -
Lapu3g03480 398 ProSiteProfiles GAT domain profile. 173 261 IPR004152 GO:0035091|GO:0043130
Lapu3g03480 398 CDD GAT_GGA-like_plant 181 257 - -
Lapu3g03480 398 MobiDBLite consensus disorder prediction 140 178 - -
Lapu3g03480 398 Gene3D - 169 269 IPR038425 -
Lapu3g03480 398 ProSiteProfiles VHS domain profile. 8 137 IPR002014 GO:0035091|GO:0043130
Lapu3g03480 398 MobiDBLite consensus disorder prediction 381 398 - -
Lapu3g03480 398 Pfam GAT domain 187 261 IPR004152 GO:0035091|GO:0043130
Lapu3g03480 398 PANTHER TOM1-LIKE PROTEIN 2 298 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lapu3g03480 398 Gene3D - 1 135 IPR008942 -
Lapu3g03480 398 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Lapu3g03480 398 Pfam VHS domain 5 112 IPR002014 GO:0035091|GO:0043130
Lapu3g03480 398 CDD VHS 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03480 Lapu-Chr3 58101079 58106725 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03480 - - gmx:100802949 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03480 3 58101079 58106725 Lapu3g03480 3 58101079 58106725 ECH
Lapu3g03480 3 58101079 58106725 Lapu9g00873 9 13110095 13116536 PCT