Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00843 ATGTCAACAAAGAAGCTCTTGTGGGTTGTTCTGTCCCTTTCCTTGGTTCTTGGAGTGGCCAATAGCTTTGATTTTCATGACAAGGATTTGGCGTCCGATGAAAGCTTGTGGGACTTGTACGAGAGATGGAGGAGTCACCACACGGTTTCGCGAAGCCTTGGTGAGAAGCACAAACGGTTTAACGTGTTCAAAGCAAATGTGATGCATGTCCATAACACTAACAAGATGGATAAGCCTTACAAGCTGAAACTGAACAAGTTCGCTGACATGACCAACCATGAATTCAGGAGTACCTATGCTGGCTCAAAGGTTAATCACCACAGGATGTTCAGAGGCACGCCACATGGGAACGGGACCTTCATGTACGAGAAGGTTGGTAGTGTTCCTCCTTCTGTGGATTGGAGGAAGAAAGGTGCTGTCACTGATGTAAAAGATCAAGGCCAATGCGGTAGCTGCTGGGCGTTTTCAACTGTTGTAGCAGTTGAAGGCATTAACCAAATCAAGACAAATAAGCTGGTCACGTTGTCTGAACAAGAGCTGGTGGACTGTGACAAGGAAGAAAACCAAGGATGCAATGGTGGGCTAATGGAATCTGCTTTCGAGTTCATCAAGCAGAAGGGAGGCATAACAACAGAAAGCAATTACCCTTACACAGCACAAGAAGGAACCTGTGATGCATCAAAGGTGATTGACCTAGCTGTGTCAATTGATGGCCATGAGAATGTCCCTGCTAACGATGAAAATGCATTGCTCAAAGCTGTCGCCAACCAACCTGTTTCTGTAGCAATCGATGCTGGGGGATCTGATTTCCAGTTCTACTCTGAGGGAGTATTTACTGGTGATTGTAGTACGGATCTAAATCACGGTGTAGCGATTGTGGGGTATGGAACAACTGTTGATGGAACTAATTACTGGATAGTGAGGAACTCTTGGGGACCAGAATGGGGAGAACATGGTTACATCAGAATGCACAGGAACATATCTAGAAAGGAGGGACTTTGTGGCATAGCCATGTTGCCTTCCTACCCAATCAAAAACTCCTCTGATAATCCAACAGGATCTTTCTCATCTCCTAAAGATGAACTTTGA 1089 0.4536 MSTKKLLWVVLSLSLVLGVANSFDFHDKDLASDESLWDLYERWRSHHTVSRSLGEKHKRFNVFKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHHRMFRGTPHGNGTFMYEKVGSVPPSVDWRKKGAVTDVKDQGQCGSCWAFSTVVAVEGINQIKTNKLVTLSEQELVDCDKEENQGCNGGLMESAFEFIKQKGGITTESNYPYTAQEGTCDASKVIDLAVSIDGHENVPANDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCSTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEHGYIRMHRNISRKEGLCGIAMLPSYPIKNSSDNPTGSFSSPKDEL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00843 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 338 IPR013128 GO:0008234
Lapu9g00843 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Lapu9g00843 362 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Lapu9g00843 362 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Lapu9g00843 362 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Lapu9g00843 362 SUPERFAMILY Cysteine proteinases 35 345 IPR038765 -
Lapu9g00843 362 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Lapu9g00843 362 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Lapu9g00843 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Lapu9g00843 362 Gene3D Cysteine proteinases 15 346 - -
Lapu9g00843 362 SMART Inhibitor_I29_2 40 95 IPR013201 -
Lapu9g00843 362 FunFam Senescence-specific cysteine protease SAG39 20 345 - -
Lapu9g00843 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Lapu9g00843 362 CDD Peptidase_C1A 129 343 IPR039417 -
Lapu9g00843 362 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00843 Lapu-Chr9 12591456 12593508 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00843 K16292 - gmx:548011 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00843 9 12591456 12593508 Lapu9g00843 9 12591456 12593508 ECH
Lapu3g01188 3 12792106 12793900 Lapu9g00843 9 12591456 12593508 PCT