Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01188 ATGGCCGAGAGCTTTGATTTCAAGGAGAAGGAGTTAGAATCCGAGGAAGGGTTTTGGGATTTGTACGAGAGATGGAGGAGCTACCACACGGTTTCACAAAGCTTCGATGAGAAGCAGAAGCGCTTCAACGTGTTCAAAGCAAATGTGATAAATGTCTACAATACGAATAAAATGGGCAAGCCTTACAAGCTGAAGTTGAACAGGTTTGCTGATATGACCAACCATGAATTCAGGAGCATCTATGCTAACTCCGAGGTGAGTCACCACAGAATGTTCCGAGGCATGCCACATGGGAATGGTACTTTCATGTATGAGAACGTTGACAGTGTTCCTCCTTCTGTGGATTGGAGGAAGAAAGGTGTTGTCACTAATGTAAAGGATCAAGGCAAATGTGCTGTTGAAGGTATTAACCAAATCAAGACACACGAGCTAGTGTCCTTGTCTGAGCAAGAACTTGTAGATTGTGACACTAAAGAGAATGAAGGATGCAATGGTGGGTTAATGGAAACTGCATTCGATTTTATCAAACAACATGGTATAACTACGGAAAGCAATTACCCCTATGAAGCAAAAGATGGAACTTGTGATGCATCAAAGATGAAGGAACCTGCAGTGTCAATTGATGGGCATGATAATGTCCCGGCCAACAATGAAGCAGCATTGCTCAAAGCTGTTGCCCATCAACCTGTATCAGTAGCCATTGATGCTGGCGGATTTGGCTTTCAGTTCTACTCAGAGGGAGTATTTACGGGAATGTGTGGGACTGATCTGAATCATGGGGTAGCAATTGTGGGGTATGGAACAACTGAAGATGGAACAAAATATTGGACAGTGAAGAACTCATGGGGAACCGAATGGGGAGAAAATGGTTACATTAGAATGGAAAGGAGCGTATTTGAGAAGGAAGGTCTCTGTGGCATAGCAATGGAGGCTTCCTATCCAATCAAAAACTCCTCCAAATCAATCCAACACTCTTCATTTCTTAAGGACGAGCTTTAA 999 0.4324 MAESFDFKEKELESEEGFWDLYERWRSYHTVSQSFDEKQKRFNVFKANVINVYNTNKMGKPYKLKLNRFADMTNHEFRSIYANSEVSHHRMFRGMPHGNGTFMYENVDSVPPSVDWRKKGVVTNVKDQGKCAVEGINQIKTHELVSLSEQELVDCDTKENEGCNGGLMETAFDFIKQHGITTESNYPYEAKDGTCDASKMKEPAVSIDGHDNVPANNEAALLKAVAHQPVSVAIDAGGFGFQFYSEGVFTGMCGTDLNHGVAIVGYGTTEDGTKYWTVKNSWGTEWGENGYIRMERSVFEKEGLCGIAMEASYPIKNSSKSIQHSSFLKDEL* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01188 332 Pfam Cathepsin propeptide inhibitor domain (I29) 22 77 IPR013201 -
Lapu3g01188 332 SUPERFAMILY Cysteine proteinases 20 316 IPR038765 -
Lapu3g01188 332 FunFam Senescence-specific cysteine protease SAG39 2 316 - -
Lapu3g01188 332 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 275 294 IPR025661 -
Lapu3g01188 332 Gene3D Cysteine proteinases 1 317 - -
Lapu3g01188 332 SMART Inhibitor_I29_2 22 77 IPR013201 -
Lapu3g01188 332 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 257 267 IPR025660 -
Lapu3g01188 332 SMART pept_c1 110 315 IPR000668 GO:0006508|GO:0008234
Lapu3g01188 332 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 16 313 IPR013128 GO:0008234
Lapu3g01188 332 Pfam Papain family cysteine protease 110 315 IPR000668 GO:0006508|GO:0008234
Lapu3g01188 332 CDD Peptidase_C1A 111 314 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01188 Lapu-Chr3 12792106 12793900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01188 K16292 - gmx:100806581 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01188 3 12792106 12793900 Lapu3g01188 3 12792106 12793900 ECH
Lapu3g01188 3 12792106 12793900 Lapu9g00843 9 12591456 12593508 PCT