Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00629 ATGGAATACCCTCCATCTTATAGCGTCTCTTCCTCTTCTCACTCCTCCCACCATCATCAACCAGGCTCAACATCCCTCTCTTCACAACGCAGTCTTATCTCAGTTCCATCCCTCAACGCTTCCACCACAACCACCACCACCTTCCACCAGTGCCTCACCACCCTCAAGGCCCACACCTCCTACATCTCCTCCCTAACCCTCTCCGGTAAATTCCTTTACACAGGTTCCTCCGACAGAGAAATCAGGTCCTGGAACCGCACTCCTCTCAGCTCCCAACCTCAGAACACTGTTCTCGCCGGAAACGGCGCCGTTAAGTCCTTAATAATTCAATCCAACAAACTCTTCAGCGCCCACCAAGACCACAAAATCCGCGTCTGGAAAATCAGCAACAGCAACAGTAACCACGAACATGTCGACGACCATAAGAAATACACGCATGTGGCCACACTCCCCACGCTGGGAGACCGCGCCTCGAAGGTTCTGATCCCGAAGAACCATGTCCAAATCCGAAGGCACAAGAAGTGCACGTGGGTTCATCACGTGGACACTGTGTCCGCGCTCGCCCTGTCCAAAGACGGGACCTTGCTGTACTCCGTTTCGTGGGACAGAACCATCAAAATCTGGAGAACCAAGGACTTCGTGTGCCTGGAGTCTCTCACCAACGCACACGAGGACGCCATAAACGCCGTGGCGGTTTCTTACGATGGACACGTGTACACTGGATCAGCAGACAAGAGAATAAAGGTGTGGAGGAAGGAGGAAGGTGAAAGAAAACACACGCTGGTGGAGAGTTTGGAGAAGCACAACTCCGGGGTGAATGCGTTGGCTCTGAGCAGTGACGAGACCCACTTGTATTCGGGTGCATGCGATAGGTCTGTCTTGGTTTGGGAGAGAAAGGGCTGGAGAATGGGGTTGGTGGGTGCGTTGAGGGGCCACACAAAATCCATTTTGTGTTTGGCTGTTGTGGCTGATTTGGTGTGTAGTGGCTCTGCTGATAAAACGATAAGAATTTGGCGAGGGCTTCATGCACAGTATTCTTGTTTAGCTGTTTTGGAAGGACACGGTGGTTCCATCAAGTGCTTAACTGCAGTGCTTGACCACTGTAACCCCTCCCACTCCCAAGCTTCTTTTCTACTCTACAGTGGCGCTTTGGACTGCCACATTAAGGTTTGGCAGATTTTAGTTCCTTCTATCTGA 1197 0.5171 MEYPPSYSVSSSSHSSHHHQPGSTSLSSQRSLISVPSLNASTTTTTTFHQCLTTLKAHTSYISSLTLSGKFLYTGSSDREIRSWNRTPLSSQPQNTVLAGNGAVKSLIIQSNKLFSAHQDHKIRVWKISNSNSNHEHVDDHKKYTHVATLPTLGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSKDGTLLYSVSWDRTIKIWRTKDFVCLESLTNAHEDAINAVAVSYDGHVYTGSADKRIKVWRKEEGERKHTLVESLEKHNSGVNALALSSDETHLYSGACDRSVLVWERKGWRMGLVGALRGHTKSILCLAVVADLVCSGSADKTIRIWRGLHAQYSCLAVLEGHGGSIKCLTAVLDHCNPSHSQASFLLYSGALDCHIKVWQILVPSI* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00629 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 338 - -
Lapu9g00629 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 260 IPR001680 GO:0005515
Lapu9g00629 398 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Lapu9g00629 398 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Lapu9g00629 398 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Lapu9g00629 398 CDD WD40 51 392 - -
Lapu9g00629 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 208 - -
Lapu9g00629 398 Pfam WD domain, G-beta repeat 215 250 IPR001680 GO:0005515
Lapu9g00629 398 Pfam WD domain, G-beta repeat 50 85 IPR001680 GO:0005515
Lapu9g00629 398 Pfam WD domain, G-beta repeat 346 391 IPR001680 GO:0005515
Lapu9g00629 398 Pfam WD domain, G-beta repeat 178 208 IPR001680 GO:0005515
Lapu9g00629 398 Pfam WD domain, G-beta repeat 263 296 IPR001680 GO:0005515
Lapu9g00629 398 Pfam WD domain, G-beta repeat 306 338 IPR001680 GO:0005515
Lapu9g00629 398 SMART WD40_4 48 85 IPR001680 GO:0005515
Lapu9g00629 398 SMART WD40_4 170 209 IPR001680 GO:0005515
Lapu9g00629 398 SMART WD40_4 344 392 IPR001680 GO:0005515
Lapu9g00629 398 SMART WD40_4 258 297 IPR001680 GO:0005515
Lapu9g00629 398 SMART WD40_4 212 251 IPR001680 GO:0005515
Lapu9g00629 398 SMART WD40_4 302 339 IPR001680 GO:0005515
Lapu9g00629 398 SMART WD40_4 90 127 IPR001680 GO:0005515
Lapu9g00629 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 208 IPR001680 GO:0005515
Lapu9g00629 398 SUPERFAMILY WD40 repeat-like 48 393 IPR036322 GO:0005515
Lapu9g00629 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 85 IPR001680 GO:0005515
Lapu9g00629 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 55 85 - -
Lapu9g00629 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Lapu9g00629 398 FunFam BnaA09g28200D protein 167 255 - -
Lapu9g00629 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 297 IPR001680 GO:0005515
Lapu9g00629 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 338 IPR001680 GO:0005515
Lapu9g00629 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 250 - -
Lapu9g00629 398 Gene3D - 22 153 IPR015943 GO:0005515
Lapu9g00629 398 MobiDBLite consensus disorder prediction 1 30 - -
Lapu9g00629 398 Gene3D - 166 395 IPR015943 GO:0005515
Lapu9g00629 398 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 393 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00629 Lapu-Chr9 7391825 7393250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00629 174 393 Acyl Lipid Metabolism Gene Families AT3G18860 25.000 7.09e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00629 - - gmx:100777242 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01088 3 11685868 11687031 Lapu9g00629 9 7391825 7393250 ECH
Lapu9g00629 9 7391825 7393250 Lapu9g00629 9 7391825 7393250 ECH
Lapu3g01088 3 11685868 11687031 Lapu9g00629 9 7391825 7393250 PCT